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IMGVR_UViG_3300043273_000006-3300043273-Ga0450860_01173_1_3681
Arc-VirIMGVR_UViG_3300043273_000006-3300043273-Ga0450860_01173_1_3681
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 479-558_785-817
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00388__D99-198_300-332
D2
medium
residues 6-80
Domain cluster:
rep: pre3_saliva_scaffold_7_prodigal-single.1__X__X__00232__D3-81
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03477.22 best | ATP-cone | 53.8 | 3.30e-14 | 100.0% | 78.4% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tj7A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.76 | 52.0 | 5.33e-01 | 96.0% | 74.6% |
| 6rxaA01 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.72 | 58.0 | 5.53e-01 | 100.0% | 74.7% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.67 | 46.0 | 4.72e-01 | 98.7% | 75.0% |
| 2fh0A00 | 1.10.8.140 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain | 0.67 | 49.0 | 4.76e-01 | 100.0% | 70.4% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.67 | 57.0 | 5.41e-01 | 100.0% | 80.7% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.67 | 55.0 | 5.30e-01 | 100.0% | 80.0% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.65 | 50.0 | 5.21e-01 | 100.0% | 97.0% |
| 4d81A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 50.0 | 4.64e-01 | 84.0% | 71.3% |
| 1w8iA00 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.61 | 39.0 | 3.07e-01 | 84.0% | 31.8% |
| 1oxjA01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.60 | 31.0 | 3.44e-01 | 82.7% | 59.0% |
| 2c4eA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.59 | 51.0 | 3.44e-01 | 98.7% | 93.3% |
| 6ilsA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 51.0 | 3.41e-01 | 100.0% | 95.2% |
| 3gagA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.57 | 39.0 | 2.86e-01 | 82.7% | 25.2% |
| 2fq4A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 50.0 | 4.16e-01 | 100.0% | 88.3% |
| 2wglA00 | 1.10.4190.10 | Mainly Alpha › Orthogonal Bundle › Urease accessory protein UreF › Urease accessory protein UreF | 0.56 | 46.0 | 3.37e-01 | 90.7% | 68.9% |
| 5ts9B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.56 | 49.0 | 3.90e-01 | 100.0% | 59.0% |
| 6wb4B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.56 | 49.0 | 3.29e-01 | 100.0% | 91.1% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.54 | 39.0 | 4.20e-01 | 86.7% | 100.0% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.54 | 43.0 | 4.49e-01 | 88.0% | 98.5% |
| 7ahdC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 46.0 | 3.27e-01 | 96.0% | 42.3% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4927666 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 1.00 | 97.0 | 8.55e-01 | 100.0% | 76.0% |
| 4993731 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.97 | 91.0 | 7.93e-01 | 100.0% | 69.5% |
| 5066162 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.96 | 89.0 | 7.86e-01 | 98.7% | 72.0% |
| 4934727 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.96 | 91.0 | 8.21e-01 | 100.0% | 77.9% |
| 4957090 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.93 | 87.0 | 7.94e-01 | 100.0% | 77.9% |
| 5034061 | 148.1.3.400 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Ribonuc_red_lgN | 0.93 | 89.0 | 6.32e-01 | 100.0% | 40.0% |
| 2141738 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.93 | 89.0 | 7.92e-01 | 100.0% | 76.8% |
| 3946182 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.92 | 81.0 | 7.57e-01 | 100.0% | 77.8% |
| 3980780 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.91 | 81.0 | 7.55e-01 | 100.0% | 77.8% |
| 4895331 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.90 | 86.0 | 7.97e-01 | 100.0% | 83.3% |
| 4681348 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.90 | 86.0 | 7.63e-01 | 100.0% | 78.0% |
| 1878970 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.90 | 85.0 | 7.48e-01 | 100.0% | 75.7% |
| 3989376 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.90 | 85.0 | 7.41e-01 | 100.0% | 71.4% |
| 5044307 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.89 | 76.0 | 7.30e-01 | 100.0% | 80.0% |
| 5051773 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.87 | 74.0 | 6.95e-01 | 100.0% | 75.6% |
| 3394718 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.87 | 70.0 | 7.58e-01 | 94.7% | 100.0% |
| 4943010 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.86 | 79.0 | 7.52e-01 | 100.0% | 85.9% |
| 4954174 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.86 | 73.0 | 6.83e-01 | 100.0% | 75.6% |
| 5057106 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.85 | 78.0 | 7.30e-01 | 100.0% | 81.1% |
| 4312875 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.85 | 71.0 | 6.48e-01 | 100.0% | 69.5% |
| 4257906 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.85 | 71.0 | 6.61e-01 | 100.0% | 73.3% |
| 5051504 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.85 | 72.0 | 7.24e-01 | 100.0% | 90.7% |
| 5004355 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.82 | 76.0 | 7.12e-01 | 100.0% | 86.7% |
| 5031461 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.79 | 67.0 | 6.79e-01 | 96.0% | 92.0% |
| 3614578 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.74 | 57.0 | 5.51e-01 | 100.0% | 72.9% |
| 3714475 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.71 | 59.0 | 6.15e-01 | 96.0% | 98.6% |
| 4890201 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 52.0 | 2.93e-01 | 85.3% | 6.6% |
| 3792504 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 55.0 | 5.59e-01 | 100.0% | 86.7% |
| 4478129 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.69 | 57.0 | 5.35e-01 | 94.7% | 74.4% |
| 5047497 | 1045.1.1.0 ↗ | alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 | 0.67 | 50.0 | 5.28e-01 | 85.3% | 90.8% |
| 4997861 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.67 | 53.0 | 4.91e-01 | 90.7% | 68.4% |
| 3940544 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 53.0 | 4.78e-01 | 88.0% | 62.9% |
| 2485687 | 4953.2.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain | 0.66 | 47.0 | 4.53e-01 | 100.0% | 65.9% |
| 4999592 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.65 | 50.0 | 5.02e-01 | 84.0% | 96.0% |
| 4014858 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 51.0 | 4.50e-01 | 85.3% | 70.0% |
| 4060907 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 48.0 | 4.70e-01 | 86.7% | 75.0% |
| 5039327 | 6102.1.1.0 ↗ | alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA | 0.64 | 54.0 | 4.25e-01 | 97.3% | 46.0% |
| 3610493 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 47.0 | 4.63e-01 | 100.0% | 73.8% |
| 3425446 | 143.1.1.0 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain | 0.63 | 56.0 | 5.39e-01 | 100.0% | 88.2% |
| 4017306 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.63 | 53.0 | 5.22e-01 | 100.0% | 91.3% |
| 3190824 | 166.1.1.0 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C | 0.63 | 52.0 | 5.23e-01 | 100.0% | 96.0% |
| 3709879 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.62 | 54.0 | 5.46e-01 | 100.0% | 98.7% |
| 4348179 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 46.0 | 4.67e-01 | 84.0% | 81.3% |
| 4472484 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.60 | 52.0 | 4.43e-01 | 98.7% | 100.0% |
| 169819 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.59 | 50.0 | 3.51e-01 | 100.0% | 28.8% |
| 4967769 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.55 | 42.0 | 3.73e-01 | 85.3% | 92.2% |
| 4033040 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.54 | 45.0 | 4.47e-01 | 100.0% | 92.5% |
| 4958521 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.54 | 34.0 | 3.69e-01 | 76.0% | 75.4% |
| 4034220 | 632.2.1.5 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 | 0.53 | 42.0 | 4.33e-01 | 94.7% | 98.6% |
| 4034571 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.52 | 43.0 | 4.34e-01 | 96.0% | 93.3% |
| 3619615 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 42.0 | 3.84e-01 | 88.0% | 75.0% |
| 3960067 | 191.1.1.49 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2 | 0.52 | 40.0 | 4.16e-01 | 88.0% | 94.3% |
| 3962155 | 191.1.1.49 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2 | 0.52 | 42.0 | 4.10e-01 | 100.0% | 81.2% |
| 4031489 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.52 | 43.0 | 4.30e-01 | 100.0% | 97.3% |
| 3723444 | 2003.1.3.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8 | 0.52 | 42.0 | 2.88e-01 | 93.3% | 74.9% |
D3
medium
residues 661-780
Domain cluster:
rep: IMGVR_UViG_3300027815_000166-3300027815-Ga0209726_100069296__D104-209
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14528.12 best | LAGLIDADG_3 | 79.8 | 2.00e-22 | 80.8% | 97.6% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7qssA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.89 | 53.0 | 4.42e-01 | 75.8% | 38.3% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.88 | 72.0 | 7.38e-01 | 100.0% | 88.6% |
| 2vs7A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.88 | 55.0 | 6.82e-01 | 82.5% | 97.4% |
| 8dy9I01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.85 | 58.0 | 4.74e-01 | 92.5% | 40.8% |
| 1dfaA03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.83 | 57.0 | 6.39e-01 | 83.3% | 89.5% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.82 | 53.0 | 5.99e-01 | 88.3% | 84.9% |
| 3hyiA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.80 | 59.0 | 5.00e-01 | 97.5% | 48.2% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.78 | 64.0 | 6.68e-01 | 98.3% | 92.8% |
| 1ef0B02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.77 | 55.0 | 4.61e-01 | 100.0% | 46.8% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.74 | 65.0 | 6.40e-01 | 98.3% | 87.5% |
| 1dq3A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.73 | 52.0 | 6.00e-01 | 85.0% | 100.0% |
| 1b24A01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.71 | 51.0 | 5.71e-01 | 84.2% | 93.7% |
| 3e54A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.71 | 63.0 | 5.70e-01 | 97.5% | 71.7% |
| 3hz7A00 | 3.30.110.40 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain | 0.68 | 35.0 | 4.47e-01 | 95.0% | 83.6% |
| 4qjvB00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.67 | 40.0 | 4.45e-01 | 73.3% | 75.5% |
| 2jgtA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.63 | 41.0 | 3.92e-01 | 77.5% | 56.0% |
| 1fc4A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.63 | 40.0 | 3.87e-01 | 77.5% | 56.6% |
| 1xppD00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.60 | 35.0 | 3.83e-01 | 74.2% | 69.3% |
| 2yxdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 35.0 | 3.03e-01 | 73.3% | 40.8% |
| 3e05B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 36.0 | 3.04e-01 | 100.0% | 39.6% |
| 5suhA02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.56 | 39.0 | 4.25e-01 | 75.0% | 84.5% |
| 2if1A00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.55 | 37.0 | 3.70e-01 | 80.0% | 66.7% |
| 3f56A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.54 | 41.0 | 4.41e-01 | 80.8% | 96.2% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.53 | 33.0 | 3.75e-01 | 80.0% | 88.0% |
| 2yvlA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 33.0 | 2.88e-01 | 73.3% | 42.3% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 30.0 | 3.57e-01 | 82.5% | 88.6% |
| 2c7rA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 32.0 | 2.72e-01 | 70.8% | 36.5% |
| 4pibA00 | 2.60.40.3910 | Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein | 0.50 | 41.0 | 3.73e-01 | 92.5% | 79.9% |
ECOD (98)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943246 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.95 | 69.0 | 7.56e-01 | 95.0% | 89.0% |
| 5029221 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.93 | 69.0 | 7.39e-01 | 99.2% | 86.7% |
| 3603759 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.92 | 69.0 | 7.43e-01 | 92.5% | 87.6% |
| 4993734 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.92 | 84.0 | 6.60e-01 | 95.8% | 51.4% |
| 5012959 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.92 | 70.0 | 7.37e-01 | 91.7% | 85.5% |
| 4997781 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.92 | 68.0 | 7.29e-01 | 90.8% | 86.7% |
| 3950413 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.92 | 72.0 | 7.57e-01 | 97.5% | 88.2% |
| 4943293 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.92 | 73.0 | 7.65e-01 | 95.8% | 89.1% |
| 4993381 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.92 | 45.0 | 5.23e-01 | 70.0% | 65.6% |
| 4629526 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.91 | 69.0 | 4.90e-01 | 100.0% | 30.0% |
| 4934140 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.91 | 67.0 | 6.89e-01 | 92.5% | 78.3% |
| 5029542 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.90 | 68.0 | 7.26e-01 | 91.7% | 87.6% |
| 5030215 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.90 | 72.0 | 7.50e-01 | 95.0% | 89.1% |
| 4993856 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.90 | 70.0 | 7.52e-01 | 89.2% | 91.4% |
| 4933369 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.89 | 83.0 | 8.09e-01 | 97.5% | 89.2% |
| 4939276 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.89 | 74.0 | 7.60e-01 | 97.5% | 88.7% |
| 5023791 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.89 | 69.0 | 7.29e-01 | 91.7% | 87.3% |
| 5028314 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.89 | 66.0 | 7.13e-01 | 93.3% | 87.6% |
| 5027690 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.89 | 72.0 | 7.51e-01 | 98.3% | 90.9% |
| 4127810 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.89 | 76.0 | 7.61e-01 | 100.0% | 88.3% |
| 4994374 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.89 | 77.0 | 7.71e-01 | 97.5% | 89.2% |
| 5028136 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.89 | 73.0 | 7.51e-01 | 94.2% | 88.7% |
| 4993483 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.89 | 66.0 | 7.10e-01 | 99.2% | 87.6% |
| 4669669 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.88 | 63.0 | 6.62e-01 | 99.2% | 80.0% |
| 3603119 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.88 | 75.0 | 7.55e-01 | 95.0% | 88.3% |
| 4971395 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.88 | 61.0 | 6.88e-01 | 90.0% | 89.5% |
| 4934172 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.88 | 51.0 | 6.69e-01 | 96.7% | 100.0% |
| 3282322 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.88 | 71.0 | 7.30e-01 | 96.7% | 87.8% |
| 4171346 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.87 | 75.0 | 7.53e-01 | 99.2% | 89.2% |
| 4113237 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.87 | 57.0 | 6.40e-01 | 95.0% | 84.2% |
| 5029357 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.86 | 70.0 | 7.14e-01 | 97.5% | 87.0% |
| 4998393 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.86 | 66.0 | 6.92e-01 | 95.0% | 86.4% |
| 5031636 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.85 | 73.0 | 7.33e-01 | 95.0% | 88.3% |
| 5028488 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.85 | 67.0 | 7.20e-01 | 95.0% | 93.3% |
| 4941329 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.85 | 62.0 | 6.83e-01 | 92.5% | 90.0% |
| 4999899 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.85 | 78.0 | 7.74e-01 | 98.3% | 92.0% |
| 5032338 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.85 | 72.0 | 7.21e-01 | 94.2% | 87.5% |
| 4559752 | 242.1.1.6 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA | 0.85 | 59.0 | 6.78e-01 | 93.3% | 94.4% |
| 4474382 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.85 | 74.0 | 7.30e-01 | 100.0% | 86.4% |
| 5013813 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.85 | 79.0 | 7.19e-01 | 96.7% | 77.3% |
| 4946210 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.85 | 67.0 | 6.99e-01 | 90.0% | 89.1% |
| 4629783 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.84 | 67.0 | 6.75e-01 | 100.0% | 82.5% |
| 3602142 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.84 | 64.0 | 6.89e-01 | 93.3% | 90.5% |
| 4288172 | 242.1.1.6 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA | 0.84 | 63.0 | 6.10e-01 | 96.7% | 70.8% |
| 5027492 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.84 | 77.0 | 7.27e-01 | 96.7% | 82.9% |
| 4979626 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.83 | 78.0 | 7.58e-01 | 100.0% | 90.8% |
| 3603293 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.83 | 66.0 | 6.76e-01 | 95.0% | 87.0% |
| 4997606 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.82 | 70.0 | 6.34e-01 | 100.0% | 68.4% |
| 4993382 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.82 | 56.0 | 6.24e-01 | 99.2% | 87.4% |
| 4377946 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.82 | 67.0 | 6.49e-01 | 97.5% | 77.7% |
| 5027606 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.82 | 74.0 | 7.30e-01 | 96.7% | 92.0% |
| 3955114 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.81 | 76.0 | 7.30e-01 | 100.0% | 88.1% |
| 4574941 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.81 | 59.0 | 6.18e-01 | 87.5% | 81.8% |
| 4946208 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.81 | 54.0 | 6.17e-01 | 89.2% | 90.0% |
| 4971295 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.81 | 60.0 | 6.74e-01 | 88.3% | 96.8% |
| 3602910 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.81 | 53.0 | 6.07e-01 | 87.5% | 88.9% |
| 4977674 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.81 | 72.0 | 5.72e-01 | 100.0% | 50.9% |
| 3952678 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.81 | 52.0 | 6.02e-01 | 74.2% | 87.8% |
| 4064719 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.81 | 59.0 | 6.28e-01 | 86.7% | 85.7% |
| 5012702 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.81 | 68.0 | 6.95e-01 | 98.3% | 91.3% |
| 1211842 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.80 | 58.0 | 6.44e-01 | 90.0% | 91.7% |
| 4096306 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.80 | 61.0 | 6.24e-01 | 94.2% | 81.7% |
| 4086765 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.80 | 60.0 | 6.28e-01 | 91.7% | 84.5% |
| 4683313 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.80 | 61.0 | 6.18e-01 | 90.8% | 79.2% |
| 3174942 | 242.1.1.3 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Hom_end | 0.80 | 65.0 | 6.53e-01 | 92.5% | 85.0% |
| 4389430 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.79 | 60.0 | 6.28e-01 | 94.2% | 85.5% |
| 4681936 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.79 | 60.0 | 6.15e-01 | 88.3% | 81.7% |
| 4561853 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.79 | 59.0 | 6.34e-01 | 95.0% | 89.5% |
| 4131749 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.79 | 58.0 | 6.09e-01 | 91.7% | 83.6% |
| 4675939 | 242.1.1.6 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA | 0.78 | 61.0 | 6.23e-01 | 97.5% | 83.5% |
| 5066391 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.78 | 65.0 | 6.15e-01 | 100.0% | 75.0% |
| 3251998 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.78 | 59.0 | 6.31e-01 | 95.8% | 90.5% |
| 5052597 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.78 | 70.0 | 6.61e-01 | 98.3% | 81.4% |
| 4937999 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.78 | 53.0 | 6.09e-01 | 88.3% | 93.3% |
| 5065185 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.78 | 53.0 | 6.08e-01 | 89.2% | 93.3% |
| 4950411 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.78 | 54.0 | 5.87e-01 | 100.0% | 85.0% |
| 4155058 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.77 | 64.0 | 6.45e-01 | 99.2% | 87.5% |
| 4221596 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.77 | 58.0 | 5.92e-01 | 91.7% | 80.9% |
| 4997602 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.76 | 59.0 | 6.31e-01 | 88.3% | 93.3% |
| 4354369 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.76 | 57.0 | 5.93e-01 | 92.5% | 83.6% |
| 5031916 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.76 | 66.0 | 6.51e-01 | 97.5% | 88.0% |
| 4412539 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.76 | 73.0 | 6.25e-01 | 100.0% | 79.4% |
| 4997777 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.76 | 50.0 | 5.87e-01 | 86.7% | 95.3% |
| 4084747 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.76 | 73.0 | 5.11e-01 | 100.0% | 40.6% |
| 4934117 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.75 | 51.0 | 6.01e-01 | 81.7% | 97.6% |
| 4075546 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.75 | 47.0 | 5.32e-01 | 100.0% | 83.3% |
| 3604140 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.75 | 72.0 | 6.07e-01 | 100.0% | 73.0% |
| 4651140 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.75 | 61.0 | 6.17e-01 | 98.3% | 86.7% |
| 4997276 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 71.0 | 6.13e-01 | 100.0% | 94.3% |
| 4975576 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 51.0 | 5.84e-01 | 88.3% | 94.4% |
| 4933368 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.72 | 48.0 | 5.57e-01 | 87.5% | 96.5% |
| 5049212 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.70 | 65.0 | 5.64e-01 | 98.3% | 92.6% |
| 3604412 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.70 | 52.0 | 5.62e-01 | 88.3% | 92.0% |
| 4975577 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.65 | 63.0 | 5.41e-01 | 100.0% | 77.7% |
| 4541172 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.65 | 56.0 | 5.43e-01 | 97.5% | 83.1% |
| 3603296 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.65 | 61.0 | 5.20e-01 | 100.0% | 75.7% |
| 5027561 | 310.3.1.3 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN | 0.55 | 39.0 | 3.89e-01 | 77.5% | 69.6% |
| 3270426 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.50 | 39.0 | 4.10e-01 | 94.2% | 94.3% |
D4
medium
residues 1016-1075
Domain cluster:
rep: IMGVR_UViG_3300006567_000026-3300006567-Ga0099958_11086953__D213-268
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 24.4 | 1.50e-05 | 100.0% | 11.3% |
D5
medium
residues 1076-1187
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02867.21 best | Ribonuc_red_lgC | 42.9 | 3.80e-11 | 50.0% | 10.5% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pg3A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 50.0 | 4.09e-01 | 98.2% | 84.1% |
| 3mwyW03 | 3.40.50.10810 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain | 0.56 | 39.0 | 3.01e-01 | 73.2% | 69.4% |
| 1h0hA02 | 3.40.50.740 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 46.0 | 3.64e-01 | 92.9% | 99.6% |
| 7yosA01 | 3.90.1640.30 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › | 0.54 | 46.0 | 3.90e-01 | 94.6% | 83.2% |
| 1ufvA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 39.0 | 3.40e-01 | 75.9% | 87.2% |
| 3jr7A03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.53 | 36.0 | 3.54e-01 | 70.5% | 94.3% |
| 1cqxA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.53 | 36.0 | 3.42e-01 | 71.4% | 91.5% |
| 7nadx02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 46.0 | 3.68e-01 | 100.0% | 97.0% |
| 1a5aA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 40.0 | 3.11e-01 | 82.1% | 85.1% |
| 2onsA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 40.0 | 3.72e-01 | 82.1% | 86.7% |
| 8cdaB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 36.0 | 3.33e-01 | 74.1% | 86.2% |
| 3bmxA02 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.51 | 41.0 | 3.30e-01 | 86.6% | 69.1% |
| 4n03A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 42.0 | 3.70e-01 | 92.0% | 98.9% |
| 1uanA00 | 3.40.50.10320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LmbE-like | 0.51 | 45.0 | 3.65e-01 | 99.1% | 79.5% |
| 3kznA01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.51 | 39.0 | 3.46e-01 | 81.2% | 96.3% |
| 3k5wA01 | 3.40.50.10260 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain | 0.50 | 37.0 | 3.09e-01 | 77.7% | 83.0% |
| 2g7zA02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.50 | 35.0 | 3.47e-01 | 71.4% | 92.5% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4934525 | 2500.1.1.2 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC | 0.90 | 78.0 | 4.81e-01 | 97.3% | 18.5% |
| 3281499 | 2005.1.1.27 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC | 0.58 | 51.0 | 4.12e-01 | 98.2% | 83.6% |
| 3386240 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.57 | 50.0 | 3.79e-01 | 98.2% | 71.6% |
| 3604580 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.56 | 48.0 | 4.30e-01 | 94.6% | 92.5% |
| None | — | 0.55 | 48.0 | 3.91e-01 | 98.2% | 86.7% | |
| None | — | 0.55 | 48.0 | 4.18e-01 | 97.3% | 95.4% | |
| 3186025 | 3676.1.1.0 ↗ | alpha duplicates or obligate multimers › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain › RNA helicase Hera dimerization domain | 0.54 | 48.0 | 3.49e-01 | 100.0% | 88.8% |
| 4986954 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.53 | 44.0 | 3.14e-01 | 92.9% | 70.1% |