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IMGVR_UViG_3300043429_000738-3300043429-Ga0451752_0000177_23952_24938

Arc-Vir

IMGVR_UViG_3300043429_000738-3300043429-Ga0451752_0000177_23952_24938

Identity

Kingdom:
archaea

Quality

90.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-57_253-306
PDB
Domain cluster: rep: NC_013599.1__YP_003344925.1__Xfas53_gene35__00035__D4-118
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.81 76.0 6.55e-01 100.0% 69.7%
3kraC00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.68 49.0 3.58e-01 75.5% 76.4%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.66 35.0 3.79e-01 70.4% 59.0%
1ithA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 49.0 4.33e-01 84.7% 90.8%
3k3uA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 43.0 3.90e-01 76.5% 88.3%
4uurA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 44.0 4.10e-01 78.6% 91.9%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 46.0 3.99e-01 83.7% 82.6%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.59 37.0 4.08e-01 100.0% 79.7%
3hh8A01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.57 49.0 4.29e-01 95.9% 94.6%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 45.0 4.07e-01 87.8% 90.0%
2vixA03 1.20.1280.240 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.56 44.0 4.22e-01 83.7% 92.9%
2ap3A00 1.20.120.570 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YkyA-like 0.56 40.0 3.20e-01 74.5% 52.6%
7zdgC02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 42.0 3.28e-01 100.0% 35.3%
2c0kB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 44.0 3.89e-01 87.8% 90.6%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.54 46.0 3.02e-01 92.9% 78.7%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 43.0 3.87e-01 90.8% 89.7%
2ficB00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.53 37.0 2.96e-01 73.5% 81.1%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.53 42.0 3.77e-01 86.7% 84.9%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.53 46.0 4.13e-01 98.0% 74.5%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.52 39.0 3.71e-01 90.8% 67.2%
1ashA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 42.0 3.77e-01 90.8% 92.5%
2g3kA00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.52 33.0 3.42e-01 77.6% 67.0%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 44.0 3.92e-01 99.0% 87.4%
4a25B01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 39.0 3.36e-01 81.6% 77.6%
1siqA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 44.0 3.81e-01 94.9% 78.7%
1ux8A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 41.0 3.93e-01 90.8% 94.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082459 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.80 72.0 7.21e-01 100.0% 94.0%
3939680 4177.1.1.3 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Arfaptin 0.58 49.0 3.69e-01 90.8% 77.4%
5001312 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.58 40.0 4.34e-01 98.0% 87.5%
3988974 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.56 43.0 4.19e-01 80.6% 78.2%
3853197 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.54 45.0 3.77e-01 99.0% 51.1%
3614323 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.52 45.0 2.98e-01 100.0% 80.9%
4988211 7011.1.1.0 ↗ alpha bundles › RodA transmembrane domain › RodA transmembrane domain › RodA transmembrane domain 0.52 43.0 3.18e-01 93.9% 75.4%
3390793 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.51 45.0 3.89e-01 100.0% 90.0%
3462660 3718.1.1.12 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › DUF1666 0.51 44.0 3.24e-01 94.9% 82.6%
4223395 4967.1.1.25 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N 0.51 41.0 2.76e-01 89.8% 31.7%
3285567 5069.1.1.17 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF6529 0.50 43.0 3.51e-01 90.8% 89.7%
D2 medium residues 62-251
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jdaB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 46.0 5.32e-01 82.6% 97.9%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.59 33.0 4.22e-01 74.2% 90.5%
4llfD02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 36.0 4.45e-01 83.2% 98.3%
1gwmA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.57 43.0 4.72e-01 79.5% 96.1%
1wcuA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.57 43.0 4.79e-01 80.0% 99.3%
4ei0A01 2.60.40.3550 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 0.56 37.0 4.27e-01 78.4% 89.4%
2xbzA00 2.60.40.2380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 34.0 4.08e-01 77.4% 97.7%
3iwzA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 31.0 3.54e-01 97.4% 82.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2702585 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.68 47.0 5.60e-01 82.1% 100.0%
1069108 10.2.1.58 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Gp10-like 0.62 37.0 4.63e-01 80.5% 99.1%
3916271 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.59 41.0 4.23e-01 70.5% 94.1%
3585061 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 39.0 4.49e-01 78.9% 93.6%
1152 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 43.0 4.72e-01 79.5% 96.1%