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IMGVR_UViG_3300043429_000738-3300043429-Ga0451752_0000177_7581_9923

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300043429_000738-3300043429-Ga0451752_0000177_7581_9923 ↗
Kingdom:: archaea

Quality

56.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 540-665

PDB

D2 high residues 730-777

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1r7jA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.70	50.0	4.08e-01	100.0%	41.1%
1zarA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.67	50.0	4.11e-01	100.0%	43.8%
2htjA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.62	43.0	4.04e-01	100.0%	58.3%
2xioA00	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.62	49.0	2.95e-01	85.4%	36.9%
6l25A00	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.61	49.0	3.04e-01	85.4%	34.9%
2napA03	3.40.228.10	Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2	0.59	49.0	3.26e-01	100.0%	51.3%
1cxsA02	3.40.228.10	Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2	0.58	50.0	3.21e-01	100.0%	51.2%
1nubA02	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.57	49.0	3.52e-01	100.0%	69.4%
4bwkB01	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.53	37.0	2.44e-01	100.0%	14.3%
2wtzA02	3.40.1190.10	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain	0.52	43.0	2.83e-01	100.0%	88.0%
4bwpB01	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.51	37.0	2.52e-01	100.0%	16.8%
3unvA01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.51	41.0	2.88e-01	100.0%	31.6%
1r3nG01	3.40.630.10	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases	0.51	41.0	2.59e-01	97.9%	42.4%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5026421	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.81	67.0	5.78e-01	100.0%	58.7%
5047539	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.76	61.0	5.09e-01	100.0%	50.0%
4930444	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.75	61.0	5.35e-01	100.0%	60.0%
4965232	101.1.3.0 ↗	alpha arrays › HTH › HTH › tetra-helical, LuxR-like	0.74	60.0	5.25e-01	100.0%	60.0%
5057209	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.73	60.0	5.25e-01	100.0%	60.0%
4941425	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.69	55.0	4.79e-01	100.0%	56.2%
4363301	3374.1.1.3 ↗	a+b complex topology › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › spore cortex-lytic enzyme catalytic domain › SpoIID	0.62	52.0	3.29e-01	100.0%	26.9%
3495745	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.61	51.0	4.47e-01	100.0%	91.3%
3492060	108.1.1.97 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7	0.60	50.0	4.36e-01	100.0%	91.3%
3401234	3226.1.1.2 ↗	alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp	0.57	46.0	2.76e-01	100.0%	65.1%
3471412	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.55	45.0	3.91e-01	100.0%	85.9%
3068250	7579.1.1.42 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4	0.54	36.0	2.36e-01	70.8%	15.1%
3706757	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.54	41.0	2.88e-01	95.8%	54.6%
4036353	4952.1.1.2 ↗	alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_aromatic	0.53	42.0	2.97e-01	100.0%	35.4%
4938177	101.1.8.0 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes	0.52	42.0	3.19e-01	100.0%	51.7%

D3 medium residues 213-301

PDB

D4 medium residues 341-415

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2xppA00	1.20.930.10	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.67	46.0	3.77e-01	72.0%	66.4%
3x3bA00	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.58	50.0	3.49e-01	100.0%	88.6%
2bh8A02	6.20.370.20	Special › Other non-globular › Rhinovirus 14, subunit 4 ›	0.56	22.0	3.15e-01	82.7%	71.9%
7sk7A01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.55	48.0	3.36e-01	97.3%	96.4%
2b3yA01	3.30.499.10	Alpha Beta › 2-Layer Sandwich › Aconitase; domain 3 › Aconitase, domain 3	0.54	47.0	3.31e-01	96.0%	59.0%
1i24A01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.54	43.0	3.05e-01	88.0%	47.5%
1pixA03	3.90.226.10	Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1	0.51	40.0	2.70e-01	85.3%	45.5%
2g1pA02	1.10.1020.10	Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2	0.51	37.0	3.49e-01	88.0%	61.0%
2fqxA02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.50	39.0	2.95e-01	84.0%	78.9%
5ig0A00	3.10.450.50	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.50	41.0	3.44e-01	89.3%	90.8%
5cemA02	1.10.510.10	Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1	0.50	38.0	2.92e-01	81.3%	57.5%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3208003	109.4.1.1685 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27595, PF30849	0.61	49.0	2.83e-01	86.7%	44.3%
3789630	633.23.1.0 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin	0.61	44.0	3.10e-01	76.0%	36.1%
4565003	324.1.1.1 ↗	a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC	0.60	43.0	3.54e-01	97.3%	43.1%
4595166	5076.2.1.0 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ	0.60	45.0	3.27e-01	82.7%	92.4%
4001646	206.1.3.12 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL	0.57	40.0	3.12e-01	72.0%	79.4%
4880209	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.57	45.0	3.33e-01	88.0%	44.1%
4269335	7542.1.1.1 ↗	a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase	0.56	48.0	3.35e-01	94.7%	56.9%
3235779	109.4.1.890 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C	0.56	42.0	2.57e-01	78.7%	17.9%
3951286	7542.1.1.1 ↗	a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase	0.56	49.0	3.02e-01	100.0%	45.1%
3338833	7542.1.1.1 ↗	a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase	0.55	48.0	3.85e-01	97.3%	93.3%
4935457	5054.1.1.6 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH	0.55	49.0	3.76e-01	97.3%	63.6%
3658066	7542.1.1.1 ↗	a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase	0.55	47.0	3.39e-01	94.7%	57.3%
4323081	7542.1.1.1 ↗	a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase	0.55	48.0	3.33e-01	96.0%	61.2%
4991555	7542.1.1.1 ↗	a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase	0.55	48.0	3.46e-01	97.3%	58.2%
3584348	206.1.1.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase	0.54	48.0	3.17e-01	100.0%	55.6%
3706976	2003.1.2.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.54	37.0	2.58e-01	98.7%	19.6%
5060030	5054.1.1.6 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH	0.53	46.0	3.49e-01	97.3%	85.9%