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IMGVR_UViG_3300043442_000267-3300043442-Ga0451685_0003576_4941_5198
Arc-VirIMGVR_UViG_3300043442_000267-3300043442-Ga0451685_0003576_4941_5198
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-84
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ph0C00 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.82 | 51.0 | 5.64e-01 | 88.1% | 79.2% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.82 | 47.0 | 5.63e-01 | 77.6% | 84.8% |
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.81 | 45.0 | 5.30e-01 | 77.6% | 78.7% |
| 2wj9B00 | 3.30.70.3580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Antirestriction protein | 0.78 | 69.0 | 5.37e-01 | 100.0% | 86.9% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 51.0 | 5.43e-01 | 92.5% | 79.7% |
| 4gywA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 51.0 | 4.32e-01 | 100.0% | 47.6% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.71 | 50.0 | 5.56e-01 | 88.1% | 94.2% |
| 1hk3A03 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.66 | 51.0 | 4.58e-01 | 83.6% | 84.8% |
| 3we0A03 | 1.10.405.40 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.64 | 50.0 | 3.95e-01 | 83.6% | 63.5% |
| 4kvmA01 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.63 | 55.0 | 3.26e-01 | 95.5% | 19.5% |
| 6oi7A01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.61 | 38.0 | 2.74e-01 | 77.6% | 21.9% |
| 2uvaG01 | 1.20.1050.120 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 53.0 | 4.22e-01 | 100.0% | 85.3% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.59 | 49.0 | 3.97e-01 | 89.6% | 58.7% |
| 4nrhB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 54.0 | 3.91e-01 | 100.0% | 53.5% |
| 5sviB00 | 3.30.40.100 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.57 | 37.0 | 4.06e-01 | 92.5% | 83.0% |
| 2bm0A03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.54 | 33.0 | 3.71e-01 | 100.0% | 82.4% |
| 4nnaA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 39.0 | 2.55e-01 | 83.6% | 42.3% |
| 7z0sF01 | 3.30.70.3270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 39.0 | 2.99e-01 | 82.1% | 70.2% |
| 4zudA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.52 | 37.0 | 2.51e-01 | 76.1% | 59.4% |
| 2jl8102 | 3.30.160.850 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 31.0 | 3.44e-01 | 88.1% | 91.1% |
| 2ebnA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 42.0 | 2.80e-01 | 94.0% | 53.0% |
| 3kk4A01 | 1.10.3990.20 | Mainly Alpha › Orthogonal Bundle › Ribbon-helix-helix fold › protein bp1543 | 0.51 | 44.0 | 3.75e-01 | 97.0% | 65.1% |
| 3fgxA00 | 3.30.2220.10 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › rbstp2171 | 0.50 | 40.0 | 3.61e-01 | 89.6% | 69.8% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4022775 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.87 | 57.0 | 3.22e-01 | 70.1% | 7.4% |
| 3380033 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.86 | 54.0 | 3.77e-01 | 89.6% | 22.6% |
| 3390887 | 109.4.1.1347 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16, TPR_19 | 0.84 | 56.0 | 3.98e-01 | 71.6% | 25.6% |
| 4096914 | 3822.1.1.1 ↗ | alpha complex topology › Intergenic-region protein › Intergenic-region protein › Intergenic-region protein › Antirestrict | 0.81 | 72.0 | 5.66e-01 | 100.0% | 61.4% |
| 5059288 | 109.4.1.195 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_11 | 0.78 | 52.0 | 3.59e-01 | 100.0% | 21.9% |
| 3591633 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.77 | 58.0 | 4.88e-01 | 80.6% | 91.8% |
| 3924389 | 109.4.1.195 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_11 | 0.75 | 52.0 | 3.83e-01 | 100.0% | 29.7% |
| 3575804 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 52.0 | 3.15e-01 | 100.0% | 12.3% |
| 3876353 | 109.4.1.95 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 | 0.72 | 50.0 | 3.92e-01 | 100.0% | 35.0% |
| 3940795 | 109.4.1.102 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › WAPL | 0.65 | 50.0 | 2.94e-01 | 89.6% | 11.0% |
| 4009765 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 57.0 | 3.63e-01 | 100.0% | 21.3% |
| 3697514 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.63 | 57.0 | 3.64e-01 | 100.0% | 28.8% |
| 3596419 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.62 | 37.0 | 4.29e-01 | 91.0% | 97.5% |
| 3278222 | 109.4.1.277 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › T7SS_EccA1_N | 0.62 | 54.0 | 3.66e-01 | 100.0% | 27.8% |
| 3248883 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 55.0 | 4.27e-01 | 98.5% | 53.6% |
| 3371755 | 109.4.1.1286 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12 | 0.61 | 54.0 | 4.17e-01 | 100.0% | 45.3% |
| 4023540 | 109.4.1.1857 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ANAPC8, TPR_8 | 0.60 | 52.0 | 3.03e-01 | 97.0% | 49.0% |
| 4576423 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 53.0 | 4.33e-01 | 100.0% | 66.4% |
| 3601527 | 109.21.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C | 0.59 | 53.0 | 3.31e-01 | 100.0% | 21.9% |
| 4083451 | 192.2.1.20 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ASNSD1-SEP | 0.57 | 44.0 | 4.16e-01 | 82.1% | 78.8% |
| 5073392 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.56 | 40.0 | 3.62e-01 | 76.1% | 90.5% |
| 4077203 | 107.1.1.10 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C550 | 0.56 | 42.0 | 3.41e-01 | 80.6% | 82.2% |
| 3703564 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.54 | 40.0 | 2.82e-01 | 79.1% | 88.4% |
| 3226818 | 109.4.1.1428 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Edg1 | 0.53 | 45.0 | 2.88e-01 | 100.0% | 27.8% |
| 3716413 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 49.0 | 3.44e-01 | 100.0% | 42.6% |
| 3441069 | 109.4.1.498 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4487 | 0.52 | 46.0 | 2.81e-01 | 100.0% | 26.3% |
| 3682974 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.52 | 45.0 | 3.09e-01 | 100.0% | 27.2% |
| 3790267 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.52 | 40.0 | 3.87e-01 | 83.6% | 92.0% |
| 5028078 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.51 | 39.0 | 2.65e-01 | 86.6% | 25.0% |
| 3672413 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 42.0 | 3.79e-01 | 91.0% | 87.8% |
| 4993567 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.50 | 44.0 | 3.37e-01 | 100.0% | 83.5% |