←Back to structures
IMGVR_UViG_3300044452_000001-3300044452-Ga0451486_006227_34_225
Arc-VirIMGVR_UViG_3300044452_000001-3300044452-Ga0451486_006227_34_225
Identity
- Kingdom:
- archaea
Quality
94.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-63
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13640.13 best | 2OG-FeII_Oxy_3 | 28.1 | 4.40e-06 | 98.4% | 60.2% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cauA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.86 | 69.0 | 4.84e-01 | 100.0% | 29.8% |
| 6l4cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.84 | 67.0 | 4.73e-01 | 100.0% | 29.3% |
| 4lejA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.83 | 66.0 | 4.71e-01 | 100.0% | 30.3% |
| 5u55A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.81 | 66.0 | 5.20e-01 | 100.0% | 45.1% |
| 1j3qB00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.80 | 63.0 | 4.48e-01 | 100.0% | 29.5% |
| 3d0jA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.71 | 57.0 | 4.40e-01 | 96.8% | 39.9% |
| 2b39A10 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 56.0 | 4.66e-01 | 100.0% | 53.4% |
| 5z06A01 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.59 | 49.0 | 3.70e-01 | 98.4% | 50.9% |
| 2e26A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 50.0 | 3.86e-01 | 100.0% | 56.1% |
| 3winE03 | 2.60.120.1090 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 48.0 | 4.14e-01 | 98.4% | 63.6% |
| 4e9kA00 | 2.60.120.1350 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 | 0.56 | 47.0 | 3.27e-01 | 98.4% | 38.7% |
| 2xzm600 | 2.20.25.100 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 | 0.55 | 37.0 | 3.53e-01 | 71.4% | 81.2% |
| 5h5oA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 40.0 | 3.31e-01 | 81.0% | 53.6% |
| 2w1sA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 46.0 | 3.68e-01 | 100.0% | 56.1% |
| 6ovbA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 45.0 | 3.56e-01 | 100.0% | 51.3% |
| 3h96C00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 42.0 | 3.37e-01 | 87.3% | 65.2% |
| 3g7mA00 | 2.60.110.10 | Mainly Beta › Sandwich › Thaumatin › Thaumatin | 0.54 | 45.0 | 3.55e-01 | 100.0% | 90.7% |
| 5xbtA01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.54 | 42.0 | 3.30e-01 | 87.3% | 90.5% |
| 3pz8C00 | 2.40.240.130 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › | 0.54 | 39.0 | 3.66e-01 | 79.4% | 66.7% |
| 2c4xA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 43.0 | 3.44e-01 | 100.0% | 55.8% |
| 3ievA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 42.0 | 3.11e-01 | 90.5% | 56.5% |
| 2xnjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 39.0 | 3.33e-01 | 79.4% | 79.8% |
| 2yfuA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 43.0 | 3.54e-01 | 100.0% | 57.9% |
| 1d0nA06 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 42.0 | 3.48e-01 | 92.1% | 86.6% |
| 3a21A03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 44.0 | 3.90e-01 | 100.0% | 67.3% |
| 2h5fB00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.52 | 37.0 | 3.55e-01 | 74.6% | 91.9% |
| 2l03A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.52 | 37.0 | 3.52e-01 | 74.6% | 94.6% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.52 | 40.0 | 3.18e-01 | 84.1% | 55.6% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 40.0 | 3.79e-01 | 87.3% | 79.2% |
| 4avrA00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.51 | 35.0 | 3.15e-01 | 73.0% | 64.9% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.51 | 36.0 | 3.91e-01 | 76.2% | 100.0% |
| 4issA03 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.51 | 39.0 | 3.21e-01 | 90.5% | 74.5% |
| 2b5iC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 42.0 | 3.77e-01 | 98.4% | 83.3% |
| 3rwnB00 | 2.60.120.1120 | Mainly Beta › Sandwich › Jelly Rolls › Sf6-type phage tail needle knob | 0.50 | 40.0 | 3.25e-01 | 100.0% | 50.6% |
| 6kwzA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.50 | 40.0 | 3.60e-01 | 95.2% | 88.8% |
| 4zfjD00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 40.0 | 2.87e-01 | 93.7% | 77.5% |
| 1xreA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.50 | 34.0 | 2.91e-01 | 71.4% | 42.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3655985 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.83 | 67.0 | 5.28e-01 | 100.0% | 44.0% |
| 4577896 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.77 | 63.0 | 5.28e-01 | 100.0% | 52.8% |
| 3903710 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.72 | 64.0 | 5.27e-01 | 100.0% | 61.7% |
| 3213521 | 10.12.1.25 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PhyH | 0.68 | 60.0 | 4.99e-01 | 98.4% | 81.8% |
| 3474916 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.67 | 58.0 | 4.71e-01 | 100.0% | 56.0% |
| 3571451 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.63 | 54.0 | 4.48e-01 | 100.0% | 54.2% |
| 4255735 | 101.1.9.98 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF4004 | 0.61 | 42.0 | 3.44e-01 | 74.6% | 38.4% |
| 4992171 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 43.0 | 4.31e-01 | 76.2% | 83.1% |
| 3939286 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.59 | 50.0 | 3.93e-01 | 100.0% | 83.4% |
| 3420356 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.59 | 43.0 | 3.52e-01 | 81.0% | 63.8% |
| 1298682 | 10.32.1.168 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › HA70_C | 0.58 | 48.0 | 3.92e-01 | 98.4% | 52.2% |
| 3843599 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.58 | 45.0 | 3.37e-01 | 87.3% | 76.6% |
| 4946681 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.57 | 38.0 | 2.38e-01 | 71.4% | 11.3% |
| 3597792 | 221.7.1.0 ↗ | a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 | 0.57 | 49.0 | 4.09e-01 | 96.8% | 90.9% |
| 3477113 | 11.2.1.24 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › SPATA6 | 0.56 | 48.0 | 3.75e-01 | 100.0% | 89.7% |
| 3542679 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.55 | 41.0 | 3.23e-01 | 79.4% | 59.3% |
| 3726745 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.55 | 38.0 | 3.30e-01 | 73.0% | 71.2% |
| 3764749 | 382.1.1.2 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP | 0.55 | 38.0 | 3.74e-01 | 73.0% | 92.9% |
| 3421857 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.55 | 41.0 | 3.44e-01 | 85.7% | 44.7% |
| 3177995 | 5050.1.1.32 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn | 0.55 | 40.0 | 2.40e-01 | 82.5% | 9.4% |
| 4136024 | 382.1.1.7 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type | 0.55 | 37.0 | 3.62e-01 | 71.4% | 86.3% |
| 4012402 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 39.0 | 3.26e-01 | 79.4% | 79.2% |
| 5070290 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.53 | 37.0 | 3.07e-01 | 74.6% | 65.6% |
| 4075642 | 382.1.1.7 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type | 0.53 | 38.0 | 3.79e-01 | 74.6% | 93.8% |
| 4960572 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 42.0 | 3.34e-01 | 100.0% | 49.7% |
| 4033336 | 3435.1.1.5 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF6119 | 0.52 | 45.0 | 2.99e-01 | 100.0% | 50.4% |
| 4992429 | 375.12.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related | 0.52 | 34.0 | 3.03e-01 | 77.8% | 43.0% |
| 3574441 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 43.0 | 3.58e-01 | 100.0% | 60.8% |
| 3382073 | 10.32.1.247 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SAC9_GBDL_1st | 0.52 | 42.0 | 3.21e-01 | 100.0% | 47.2% |
| 3999847 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.51 | 36.0 | 2.74e-01 | 74.6% | 59.3% |
| 3928042 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 44.0 | 3.85e-01 | 100.0% | 81.0% |
| 3275234 | 11.1.4.127 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7035 | 0.51 | 41.0 | 3.51e-01 | 92.1% | 80.9% |
| 3774761 | 11.1.1.275 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Ra_N | 0.51 | 43.0 | 3.93e-01 | 96.8% | 75.3% |