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IMGVR_UViG_3300044580_000410-3300044580-Ga0485776_0000480_86138_86515

Arc-Vir

IMGVR_UViG_3300044580_000410-3300044580-Ga0485776_0000480_86138_86515

Identity

Kingdom:
archaea

Quality

89.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-120
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ti2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 39.0 4.52e-01 100.0% 73.8%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.71 28.0 3.22e-01 98.3% 47.3%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.71 45.0 4.98e-01 72.6% 79.2%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.70 48.0 5.02e-01 79.5% 76.1%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.69 48.0 4.97e-01 100.0% 77.1%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 24.0 3.25e-01 94.9% 57.6%
3sd2A01 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 36.0 4.23e-01 80.3% 75.3%
4a18P00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.66 26.0 3.39e-01 95.7% 62.1%
2gy5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 37.0 3.98e-01 82.9% 64.6%
4bfeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 34.0 3.98e-01 80.3% 71.6%
4o5lL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 38.0 4.01e-01 83.8% 66.3%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 37.0 4.16e-01 80.3% 75.8%
3u83A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 34.0 3.70e-01 82.9% 63.4%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 27.0 3.42e-01 100.0% 68.7%
1fltX00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 33.0 3.62e-01 83.8% 65.3%
4fa8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 4.18e-01 82.9% 76.0%
2cqvA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 31.0 3.23e-01 80.3% 53.5%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 33.0 3.61e-01 81.2% 67.4%
1g4mA01 2.60.40.840 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 45.0 3.98e-01 82.9% 70.2%
1cs6A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 32.0 3.41e-01 80.3% 61.9%
2gy5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 34.0 3.70e-01 82.9% 70.7%
7w6yA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.55 31.0 3.59e-01 98.3% 77.8%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 45.0 3.69e-01 90.6% 92.9%
4geiA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.79e-01 80.3% 72.2%
4r7vA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 41.0 3.77e-01 81.2% 66.4%
2kjpA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 28.0 3.29e-01 92.3% 74.7%
6muwM00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 39.0 3.27e-01 80.3% 90.1%
2or7A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.84e-01 86.3% 79.4%
3cerC01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 41.0 4.02e-01 100.0% 76.6%
3mdqA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 40.0 4.00e-01 100.0% 78.9%
8adnN01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.52 41.0 3.47e-01 83.8% 96.3%
4eeeA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.77e-01 87.2% 76.5%
1t6cA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 40.0 3.93e-01 100.0% 77.6%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.51 41.0 3.44e-01 86.3% 94.0%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 31.0 3.17e-01 97.4% 63.1%
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 29.0 2.93e-01 100.0% 53.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164102 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.73 27.0 4.25e-01 98.3% 88.9%
3967665 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.71 28.0 3.58e-01 98.3% 60.0%
5000498 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.70 26.0 3.64e-01 97.4% 66.7%
3534557 11.1.1.1263 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28860 0.69 32.0 3.87e-01 82.9% 65.0%
4944289 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.67 37.0 4.39e-01 97.4% 78.8%
3880054 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 32.0 4.00e-01 81.2% 73.3%
3562307 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 38.0 4.10e-01 83.8% 68.0%
4327417 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.64 46.0 4.69e-01 90.6% 76.5%
3385864 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.63 28.0 3.85e-01 100.0% 81.7%
3381245 11.2.1.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF7651 0.63 55.0 5.12e-01 100.0% 75.2%
3387994 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.63 28.0 3.28e-01 100.0% 57.5%
3217851 302.2.1.0 ↗ a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit 0.62 44.0 4.44e-01 79.5% 73.9%
3934401 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 39.0 4.07e-01 87.2% 68.2%
3790830 11.1.1.378 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rgp1 0.60 47.0 4.05e-01 81.2% 61.2%
3258875 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 45.0 4.14e-01 80.3% 73.3%
3636985 11.1.1.416 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SPC22 0.59 45.0 3.89e-01 81.2% 68.3%
4125419 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.58 29.0 2.85e-01 100.0% 41.5%
5059796 4326.1.1.0 ↗ a+b two layers › ERH-like › ERH-like › ERH-like 0.58 33.0 4.06e-01 93.2% 94.2%
3899651 11.1.1.805 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.58 38.0 3.94e-01 83.8% 70.9%
4542786 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.57 42.0 3.43e-01 94.0% 42.4%
4882475 210.1.1.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.56 32.0 3.67e-01 98.3% 75.6%
3517702 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.56 43.0 3.68e-01 82.9% 62.1%
4349990 11.1.1.934 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N, Arrestin_C 0.56 47.0 3.31e-01 90.6% 88.5%
4393026 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.55 44.0 4.24e-01 100.0% 75.4%
3615394 11.1.4.80 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › C2_ITFG1 0.55 40.0 3.99e-01 100.0% 72.5%
3170806 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.55 42.0 3.78e-01 81.2% 76.4%
3621748 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.55 42.0 3.87e-01 80.3% 70.0%
3238842 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 4.08e-01 86.3% 71.1%
3782563 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.54 42.0 3.73e-01 82.1% 75.9%
4629529 2002.1.1.420 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI, PF25918 0.53 40.0 2.72e-01 77.8% 91.4%
4961538 2002.1.1.256 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MSH_C 0.53 39.0 2.67e-01 76.1% 91.4%
4154245 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.53 43.0 4.22e-01 100.0% 80.0%
5009779 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.53 41.0 4.08e-01 100.0% 78.4%
3554439 11.1.1.934 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N, Arrestin_C 0.53 46.0 3.26e-01 96.6% 82.9%
4373360 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.52 40.0 3.66e-01 80.3% 69.0%
5063324 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.52 41.0 4.04e-01 100.0% 78.4%
3213808 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.52 40.0 3.70e-01 81.2% 71.3%
5020335 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.52 41.0 4.02e-01 100.0% 78.4%
3933576 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.52 40.0 3.35e-01 82.1% 50.7%
3918491 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.52 43.0 3.40e-01 89.7% 84.4%
4160951 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.52 42.0 3.33e-01 94.0% 43.0%
4556297 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.51 40.0 3.39e-01 82.9% 93.4%
11204 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.51 40.0 3.92e-01 100.0% 77.0%
3662110 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.51 41.0 3.41e-01 87.2% 93.3%
4167904 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.51 39.0 3.30e-01 82.9% 89.8%
3874808 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.50 40.0 3.24e-01 86.3% 79.0%
4858762 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.50 40.0 3.36e-01 86.3% 90.9%
4354137 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.50 40.0 3.33e-01 86.3% 87.9%
3400905 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.50 41.0 3.44e-01 90.6% 92.1%
2516752 2.1.1.32 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.50 24.0 3.11e-01 100.0% 86.2%