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IMGVR_UViG_3300044723_007655-3300044723-Ga0453784_0004740_3_494

Arc-Vir

IMGVR_UViG_3300044723_007655-3300044723-Ga0453784_0004740_3_494

Quality

85.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-132
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mcaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.78 58.0 4.70e-01 79.7% 64.4%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.77 57.0 5.16e-01 79.7% 66.7%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.76 67.0 6.09e-01 100.0% 87.4%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.76 54.0 4.89e-01 76.6% 56.2%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.76 57.0 5.55e-01 81.2% 73.2%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.75 58.0 5.18e-01 82.8% 68.9%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.74 56.0 4.84e-01 82.8% 66.3%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.73 62.0 5.55e-01 95.3% 90.1%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.72 63.0 5.42e-01 100.0% 87.4%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.71 53.0 4.98e-01 81.2% 87.5%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.71 57.0 4.95e-01 89.1% 73.0%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.70 57.0 5.18e-01 93.8% 89.1%
2j5uA03 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.70 58.0 5.43e-01 93.8% 83.7%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.70 49.0 4.65e-01 75.0% 64.9%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.69 54.0 4.73e-01 85.9% 58.8%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.69 49.0 4.58e-01 75.0% 93.7%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.68 50.0 4.74e-01 78.1% 74.0%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.68 52.0 4.62e-01 85.9% 61.9%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.68 48.0 4.64e-01 75.0% 98.6%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.67 47.0 4.22e-01 75.0% 54.3%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.67 47.0 4.25e-01 75.0% 56.7%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.66 48.0 5.19e-01 78.1% 98.1%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 46.0 3.52e-01 75.0% 54.1%
2f9hA00 2.40.33.40 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › Phosphotransferase system, glucitol/sorbitol-specific IIA component 0.64 47.0 3.94e-01 81.2% 66.1%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.64 44.0 4.00e-01 71.9% 78.4%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.63 47.0 4.29e-01 85.9% 60.6%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 46.0 3.92e-01 84.4% 75.2%
4fl4F02 2.60.40.4130 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 48.0 3.68e-01 92.2% 46.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.18e-01 79.7% 76.7%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 40.0 3.41e-01 75.0% 99.2%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.56 37.0 4.23e-01 79.7% 95.7%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.14e-01 79.7% 68.8%
1gaxA03 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.54 43.0 3.36e-01 90.6% 43.1%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 3.67e-01 85.9% 91.7%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.79e-01 76.6% 79.7%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.45e-01 82.8% 79.1%
5i0fB04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 38.0 3.49e-01 79.7% 71.4%
3qugA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 41.0 3.53e-01 96.9% 87.6%
2yc2A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 41.0 3.34e-01 95.3% 93.2%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4556837 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.81 70.0 6.86e-01 98.4% 87.1%
3634374 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.80 57.0 6.29e-01 76.6% 96.0%
4130681 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.76 65.0 6.18e-01 95.3% 92.0%
4097656 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.76 67.0 5.91e-01 100.0% 81.1%
4943228 1.1.7.146 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_Xtn 0.76 55.0 5.56e-01 78.1% 76.9%
5078547 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.75 57.0 5.00e-01 81.2% 69.5%
3504860 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.75 56.0 5.45e-01 79.7% 100.0%
4070992 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 58.0 4.79e-01 82.8% 60.9%
3590667 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.75 66.0 4.52e-01 100.0% 42.9%
4606097 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.75 64.0 5.91e-01 96.9% 91.7%
3599398 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.74 66.0 5.68e-01 100.0% 85.0%
4880433 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 56.0 5.47e-01 81.2% 74.3%
3392294 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.74 53.0 4.59e-01 76.6% 52.0%
3975132 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 56.0 4.98e-01 81.2% 72.2%
3793066 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.74 65.0 5.79e-01 100.0% 86.0%
3822850 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.73 63.0 5.52e-01 98.4% 90.0%
1282236 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.73 64.0 4.74e-01 100.0% 59.4%
4668791 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.73 63.0 5.42e-01 100.0% 78.1%
4945827 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.72 60.0 5.41e-01 93.8% 91.1%
4927036 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.72 60.0 5.46e-01 92.2% 87.1%
4653293 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 59.0 4.91e-01 89.1% 69.1%
4381865 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.72 59.0 4.88e-01 89.1% 66.4%
4158768 1.1.7.50 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.72 59.0 4.97e-01 89.1% 72.4%
4028218 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.72 59.0 4.64e-01 89.1% 78.5%
4526968 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.72 59.0 4.95e-01 89.1% 69.5%
4243239 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.72 58.0 4.62e-01 89.1% 58.5%
1171020 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.72 62.0 5.43e-01 96.9% 85.4%
3602123 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.71 60.0 5.64e-01 93.8% 88.5%
None 0.71 57.0 4.96e-01 89.1% 73.0%
3579597 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.71 57.0 4.79e-01 89.1% 68.2%
3620431 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 58.0 4.80e-01 89.1% 68.2%
4518161 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 57.0 4.85e-01 89.1% 69.5%
4084726 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 59.0 5.02e-01 92.2% 71.4%
161224 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.70 58.0 5.06e-01 93.8% 82.0%
3719677 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 57.0 4.30e-01 89.1% 50.3%
1758803 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.70 54.0 5.46e-01 84.4% 87.5%
4932427 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.70 57.0 5.18e-01 92.2% 86.7%
5016579 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.70 57.0 5.34e-01 92.2% 91.1%
4534931 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.69 50.0 4.78e-01 76.6% 66.7%
3396951 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.69 51.0 3.13e-01 79.7% 18.3%
4029263 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.68 51.0 4.14e-01 79.7% 68.3%
4972564 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.68 53.0 4.71e-01 85.9% 60.0%
3987212 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.68 52.0 4.48e-01 84.4% 58.1%
4272870 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.68 52.0 4.62e-01 84.4% 58.9%
4944119 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.68 52.0 4.60e-01 84.4% 58.9%
3382832 4.1.1.302 beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.68 50.0 3.64e-01 79.7% 74.4%
3590326 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.68 52.0 4.53e-01 85.9% 56.2%
1175108 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.67 51.0 4.23e-01 81.2% 68.8%
3436022 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 50.0 5.33e-01 79.7% 94.5%
3652661 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.67 50.0 3.95e-01 79.7% 94.6%
3388074 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 51.0 4.57e-01 82.8% 73.3%
4192745 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.67 52.0 4.62e-01 85.9% 60.0%
3675341 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 50.0 5.37e-01 79.7% 94.5%
4146985 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.67 56.0 4.66e-01 92.2% 70.9%
4583465 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.66 48.0 5.24e-01 76.6% 100.0%
4974669 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.65 49.0 4.37e-01 79.7% 58.9%
4060488 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 48.0 4.54e-01 81.2% 66.3%
3174977 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 46.0 4.00e-01 73.4% 53.7%
None 0.65 58.0 3.62e-01 100.0% 70.3%
5004050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.64e-01 78.1% 78.6%
5023831 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.52e-01 75.0% 100.0%
4585317 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.65 48.0 5.16e-01 79.7% 94.5%
2426920 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.64 44.0 4.69e-01 71.9% 98.2%
4665407 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.63 45.0 4.97e-01 76.6% 98.0%
1516038 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.63 47.0 4.29e-01 85.9% 60.6%
3975943 11.1.1.42 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C 0.63 52.0 4.70e-01 93.8% 95.6%
3782292 4.1.1.170 beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.62 44.0 4.15e-01 75.0% 95.0%
4516378 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.62 46.0 4.52e-01 79.7% 78.6%
3256507 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 4.23e-01 93.8% 95.3%
3900825 593.1.1.1 alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.56 39.0 2.54e-01 73.4% 16.0%
3515354 59.1.1.1 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RPC5 0.55 38.0 2.85e-01 71.9% 70.0%
5043602 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 3.91e-01 95.3% 97.9%
3275824 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.71e-01 89.1% 91.0%
D2 medium residues 1-66
PDB