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IMGVR_UViG_3300045457_000622-3300045457-Ga0466385_0002501_912_4181
Arc-VirIMGVR_UViG_3300045457_000622-3300045457-Ga0466385_0002501_912_4181
Identity
- Kingdom:
- archaea
Quality
61.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 118-170
Domain cluster:
rep: OP053362.1__UYE97273.1__X__00108__D357-406
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.63 | 42.0 | 3.02e-01 | 88.7% | 23.4% |
| 4a0tA01 | 6.20.80.10 | Special › Other non-globular › Glycosyl hydrolase fold › | 0.59 | 46.0 | 4.52e-01 | 92.5% | 96.7% |
| 2vh2A02 | 3.40.50.11690 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cell division protein FtsQ/DivIB | 0.54 | 42.0 | 3.24e-01 | 88.7% | 84.7% |
| 6dxwA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.51 | 36.0 | 2.46e-01 | 77.4% | 26.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1820980 | 79.1.1.2 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Hyaluronidase_1 | 0.86 | 79.0 | 5.10e-01 | 100.0% | 30.7% |
| 1114176 | 79.1.1.2 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Hyaluronidase_1 | 0.79 | 60.0 | 3.74e-01 | 100.0% | 15.8% |
| 2754026 | 79.1.1.2 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Hyaluronidase_1 | 0.79 | 59.0 | 3.69e-01 | 100.0% | 15.6% |
| 1117604 | 79.1.1.2 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Hyaluronidase_1 | 0.77 | 59.0 | 4.17e-01 | 100.0% | 28.4% |
| 3915890 | 10.1.1.5 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin | 0.62 | 50.0 | 4.03e-01 | 92.5% | 61.8% |
| 3287619 | 207.2.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 | 0.59 | 50.0 | 2.98e-01 | 100.0% | 15.5% |
| 4025709 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.56 | 43.0 | 4.20e-01 | 96.2% | 95.4% |
| 3700654 | 6110.1.1.1 ↗ | alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 | 0.52 | 35.0 | 2.12e-01 | 73.6% | 13.7% |
D2
medium
residues 517-581
D3
medium
residues 868-948
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1swgC00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.62 | 47.0 | 4.06e-01 | 80.2% | 82.5% |
| 3ef8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 49.0 | 4.04e-01 | 91.4% | 81.8% |
| 1z94B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 45.0 | 3.76e-01 | 85.2% | 58.0% |
| 3w15A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 47.0 | 3.23e-01 | 100.0% | 66.5% |
| 4g59C02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.54 | 44.0 | 3.49e-01 | 86.4% | 79.7% |
| 3otlA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 43.0 | 3.54e-01 | 87.7% | 57.5% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 44.0 | 3.62e-01 | 88.9% | 61.8% |
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 45.0 | 2.91e-01 | 100.0% | 49.8% |
| 1nhpA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.53 | 34.0 | 3.09e-01 | 70.4% | 46.9% |
| 1of5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 38.0 | 3.23e-01 | 79.0% | 86.4% |
| 2k6hA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.52 | 45.0 | 3.63e-01 | 100.0% | 61.5% |
| 2cduA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 33.0 | 3.03e-01 | 70.4% | 47.8% |
| 2lyxA00 | 3.10.450.390 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 | 0.50 | 35.0 | 3.46e-01 | 74.1% | 96.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3430448 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.64 | 47.0 | 4.01e-01 | 77.8% | 50.8% |
| 3925444 | 5087.3.1.0 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C | 0.63 | 55.0 | 4.03e-01 | 95.1% | 68.4% |
| 4033695 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.62 | 54.0 | 4.94e-01 | 96.3% | 74.3% |
| 3915238 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.60 | 53.0 | 3.44e-01 | 97.5% | 80.3% |
| 3396540 | 331.3.1.20 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C | 0.57 | 46.0 | 3.39e-01 | 88.9% | 48.3% |
| 3648209 | 3459.1.1.3 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 | 0.57 | 45.0 | 3.94e-01 | 85.2% | 64.8% |
| 4964191 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.57 | 43.0 | 3.18e-01 | 80.2% | 91.4% |
| 3239309 | 11.1.1.53 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DOMON | 0.56 | 45.0 | 3.50e-01 | 88.9% | 71.8% |
| 4441646 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.56 | 49.0 | 3.75e-01 | 97.5% | 50.3% |
| 3718823 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 48.0 | 3.05e-01 | 100.0% | 57.6% |
| 4029155 | 5.1.4.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd | 0.54 | 46.0 | 3.02e-01 | 100.0% | 50.0% |
| 3716442 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 44.0 | 2.94e-01 | 100.0% | 47.5% |
| 3716329 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.51 | 39.0 | 3.07e-01 | 80.2% | 42.4% |
| 3744407 | 5.1.4.97 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop | 0.51 | 42.0 | 2.79e-01 | 100.0% | 45.8% |
| 3647427 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.50 | 40.0 | 3.42e-01 | 86.4% | 64.6% |
| 3218203 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.50 | 39.0 | 3.19e-01 | 85.2% | 47.1% |