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IMGVR_UViG_3300045988_008371-3300045988-Ga0495776_102399_11679_12377
Arc-VirIMGVR_UViG_3300045988_008371-3300045988-Ga0495776_102399_11679_12377
Identity
- Kingdom:
- archaea
Quality
58.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 65-180
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5tkyA05 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.93 | 29.0 | 3.44e-01 | 76.7% | 42.5% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.76 | 30.0 | 3.67e-01 | 85.3% | 56.4% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.70 | 32.0 | 3.93e-01 | 87.1% | 67.1% |
| 1u7gA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.61 | 47.0 | 3.23e-01 | 81.0% | 58.2% |
| 4c3eM00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.59 | 36.0 | 3.27e-01 | 77.6% | 45.2% |
| 2yhsA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.59 | 43.0 | 4.67e-01 | 92.2% | 91.8% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 36.0 | 3.69e-01 | 81.0% | 67.0% |
| 1oshA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.55 | 45.0 | 3.64e-01 | 86.2% | 61.6% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.54 | 41.0 | 4.45e-01 | 87.9% | 100.0% |
| 2qksA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 34.0 | 3.63e-01 | 84.5% | 70.8% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 37.0 | 4.09e-01 | 91.4% | 87.4% |
| 1tfkB00 | 1.20.120.650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D | 0.53 | 35.0 | 3.94e-01 | 72.4% | 91.9% |
| 1of9A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.52 | 34.0 | 3.92e-01 | 76.7% | 98.7% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 39.0 | 3.85e-01 | 81.0% | 92.7% |
| 1pduA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 37.0 | 3.01e-01 | 75.9% | 51.3% |
| 2oezA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.50 | 38.0 | 3.40e-01 | 79.3% | 79.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5055566 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.70 | 32.0 | 3.29e-01 | 86.2% | 45.2% |
| 4951660 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.64 | 42.0 | 4.79e-01 | 86.2% | 86.7% |
| 3961148 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.60 | 32.0 | 3.22e-01 | 87.1% | 50.8% |
| 4004189 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.59 | 40.0 | 3.59e-01 | 90.5% | 50.0% |
| 3398607 | 1111.1.1.2 ↗ | alpha complex topology › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › Trimeric intracellular cation (TRIC) channel › TRIC | 0.58 | 48.0 | 3.82e-01 | 91.4% | 51.2% |
| None | — | 0.57 | 41.0 | 3.11e-01 | 75.0% | 94.6% | |
| 3906191 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.57 | 35.0 | 3.13e-01 | 87.1% | 45.8% |
| 3236134 | 4323.1.1.1 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.57 | 34.0 | 2.92e-01 | 90.5% | 39.4% |
| 4451760 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.54 | 40.0 | 3.90e-01 | 78.4% | 89.2% |
| 3284826 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.53 | 44.0 | 3.66e-01 | 93.1% | 75.5% |
| 4927816 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.52 | 40.0 | 3.36e-01 | 82.8% | 52.9% |
| 3272337 | 3922.1.1.64 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Sin3_corepress | 0.51 | 38.0 | 3.82e-01 | 87.9% | 77.4% |
D2
medium
residues 181-232