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IMGVR_UViG_3300045988_008371-3300045988-Ga0495776_102399_14572_14781
Arc-VirIMGVR_UViG_3300045988_008371-3300045988-Ga0495776_102399_14572_14781
Identity
- Kingdom:
- archaea
Quality
72.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 15-61
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.72 | 60.0 | 4.41e-01 | 100.0% | 68.1% |
| 5y2vC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 53.0 | 4.51e-01 | 89.4% | 87.1% |
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 53.0 | 4.40e-01 | 89.4% | 84.3% |
| 1db3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.68 | 49.0 | 3.13e-01 | 76.6% | 20.1% |
| 6h9dA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.68 | 47.0 | 3.38e-01 | 93.6% | 23.6% |
| 3n4dA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.68 | 56.0 | 3.99e-01 | 93.6% | 52.8% |
| 4yzgA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.68 | 58.0 | 3.57e-01 | 100.0% | 17.0% |
| 3fxqB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 53.0 | 4.46e-01 | 93.6% | 85.6% |
| 3ay3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.67 | 47.0 | 3.05e-01 | 95.7% | 15.9% |
| 3k4oA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.66 | 55.0 | 3.51e-01 | 100.0% | 18.1% |
| 6g1dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 4.47e-01 | 93.6% | 93.9% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 49.0 | 3.62e-01 | 85.1% | 64.3% |
| 6lpfA01 | 1.10.730.20 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › | 0.64 | 51.0 | 3.60e-01 | 95.7% | 27.0% |
| 1w07A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.62 | 54.0 | 3.71e-01 | 100.0% | 61.3% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.62 | 44.0 | 3.57e-01 | 76.6% | 47.1% |
| 3lkdA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 50.0 | 3.18e-01 | 100.0% | 37.2% |
| 2pexA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 46.0 | 3.51e-01 | 95.7% | 56.6% |
| 1r7jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 48.0 | 4.01e-01 | 95.7% | 86.7% |
| 3dupA02 | 3.30.750.160 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.59 | 48.0 | 3.68e-01 | 91.5% | 40.6% |
| 1kf6C00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.58 | 49.0 | 3.64e-01 | 100.0% | 37.7% |
| 6tqfA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.58 | 47.0 | 2.83e-01 | 100.0% | 12.0% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 45.0 | 3.78e-01 | 95.7% | 76.8% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.44e-01 | 91.5% | 37.6% |
| 1hc7A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 45.0 | 2.94e-01 | 100.0% | 83.3% |
| 7febA03 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.57 | 42.0 | 3.51e-01 | 85.1% | 43.5% |
| 6j7xA01 | 1.25.40.120 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase | 0.57 | 44.0 | 2.77e-01 | 100.0% | 14.9% |
| 2wb6A00 | 3.90.1150.90 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.57 | 43.0 | 3.44e-01 | 91.5% | 47.4% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 43.0 | 4.04e-01 | 85.1% | 66.7% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 43.0 | 3.12e-01 | 89.4% | 58.9% |
| 2x49A04 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.56 | 44.0 | 3.63e-01 | 95.7% | 93.9% |
| 3tthB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 45.0 | 3.13e-01 | 93.6% | 37.2% |
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 42.0 | 3.32e-01 | 89.4% | 76.5% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 41.0 | 3.20e-01 | 100.0% | 74.4% |
| 7oslA02 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.52 | 40.0 | 3.28e-01 | 91.5% | 86.0% |
| 3c9pA00 | 1.10.8.290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › uncharacterized protein sp1917 domain | 0.52 | 43.0 | 3.26e-01 | 97.9% | 63.1% |
| 2zg6A02 | 1.10.150.660 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.50 | 35.0 | 3.14e-01 | 100.0% | 50.0% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5037358 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.75 | 60.0 | 4.02e-01 | 91.5% | 37.8% |
| 3709334 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.74 | 53.0 | 4.22e-01 | 76.6% | 41.1% |
| 2501134 | 2484.1.1.87 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MreB-like_C | 0.73 | 61.0 | 4.21e-01 | 97.9% | 59.5% |
| 3607656 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.72 | 51.0 | 4.11e-01 | 76.6% | 41.1% |
| 5073893 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 50.0 | 4.20e-01 | 78.7% | 81.2% |
| 5067929 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 47.0 | 3.98e-01 | 72.3% | 80.0% |
| 3946198 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.68 | 53.0 | 4.52e-01 | 91.5% | 87.1% |
| 4371313 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.67 | 52.0 | 4.32e-01 | 93.6% | 78.9% |
| 5035979 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 51.0 | 3.92e-01 | 89.4% | 69.2% |
| 3736384 | 315.1.1.6 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › Tautomerase_3 | 0.66 | 53.0 | 3.71e-01 | 91.5% | 49.0% |
| 4959895 | 3352.1.1.0 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain | 0.65 | 54.0 | 3.22e-01 | 100.0% | 26.6% |
| 3532208 | 7558.1.1.10 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C | 0.64 | 54.0 | 3.68e-01 | 97.9% | 73.0% |
| 4295159 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.64 | 49.0 | 3.25e-01 | 85.1% | 97.5% |
| 4927033 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.64 | 49.0 | 4.11e-01 | 87.2% | 88.2% |
| 4029355 | 320.4.1.3 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB | 0.64 | 51.0 | 4.15e-01 | 100.0% | 81.0% |
| 3968802 | 3831.1.1.1 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI | 0.64 | 52.0 | 4.26e-01 | 100.0% | 70.4% |
| 3232177 | 109.4.1.1297 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 | 0.63 | 51.0 | 2.86e-01 | 89.4% | 10.1% |
| 3720488 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.63 | 50.0 | 3.72e-01 | 93.6% | 33.1% |
| 4933514 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 49.0 | 3.59e-01 | 89.4% | 90.0% |
| 5044919 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 48.0 | 4.26e-01 | 87.2% | 95.9% |
| 3185295 | 129.1.1.51 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ADH_zinc_N | 0.62 | 52.0 | 3.51e-01 | 97.9% | 99.5% |
| 2771202 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.62 | 46.0 | 3.26e-01 | 85.1% | 24.4% |
| 3728141 | 2003.1.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N | 0.62 | 52.0 | 3.45e-01 | 97.9% | 98.5% |
| 3757451 | 3755.3.1.297 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 | 0.62 | 50.0 | 3.52e-01 | 93.6% | 47.5% |
| 3984604 | 7558.1.1.10 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C | 0.61 | 46.0 | 3.74e-01 | 85.1% | 91.6% |
| 3291498 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 48.0 | 3.53e-01 | 93.6% | 72.4% |
| 3386464 | 3255.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › a/b domain in flagellar biosynthesis protein flhA › FHIPEP | 0.61 | 50.0 | 3.90e-01 | 95.7% | 45.9% |
| 3955641 | 101.1.2.734 ↗ | alpha arrays › HTH › HTH › winged helix domain › AbiEi_2 | 0.61 | 51.0 | 4.30e-01 | 100.0% | 94.1% |
| 4947296 | 101.1.2.905 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF4443 | 0.60 | 45.0 | 3.98e-01 | 87.2% | 93.3% |
| 3738071 | 129.1.1.51 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ADH_zinc_N | 0.60 | 46.0 | 3.15e-01 | 91.5% | 99.5% |
| 3172877 | 2003.1.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N | 0.59 | 48.0 | 3.25e-01 | 97.9% | 91.2% |
| 5043021 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 45.0 | 3.78e-01 | 87.2% | 77.8% |
| 3597578 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.59 | 49.0 | 2.99e-01 | 97.9% | 24.3% |
| 5039516 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 39.0 | 3.31e-01 | 76.6% | 37.6% |
| 3172256 | 129.1.1.51 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ADH_zinc_N | 0.59 | 48.0 | 3.18e-01 | 97.9% | 89.1% |
| 5036500 | 101.1.2.222 ↗ | alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N | 0.58 | 44.0 | 3.66e-01 | 83.0% | 77.6% |
| 4014236 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 45.0 | 3.40e-01 | 89.4% | 34.4% |
| 3923638 | 109.4.1.382 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS | 0.58 | 47.0 | 2.99e-01 | 95.7% | 39.2% |
| 5039174 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.58 | 44.0 | 4.08e-01 | 83.0% | 70.0% |
| 2613 | 101.1.2.105 ↗ | alpha arrays › HTH › HTH › winged helix domain › MotA_activ | 0.58 | 45.0 | 3.78e-01 | 95.7% | 76.8% |
| 3393038 | 5089.1.1.0 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains | 0.57 | 48.0 | 2.88e-01 | 93.6% | 98.4% |
| 3187789 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.56 | 49.0 | 2.93e-01 | 97.9% | 16.7% |
| 5048340 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 40.0 | 3.42e-01 | 78.7% | 94.1% |
| 4969797 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.55 | 46.0 | 3.56e-01 | 97.9% | 47.8% |
| 2867996 | 101.1.2.457 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_AprA | 0.54 | 43.0 | 3.17e-01 | 100.0% | 92.8% |
| 3808197 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.54 | 40.0 | 3.03e-01 | 89.4% | 77.1% |
| 3641067 | 2007.5.1.20 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase,PMR5N | 0.52 | 45.0 | 2.86e-01 | 100.0% | 34.3% |
| 3979813 | 101.19.1.1 ↗ | alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › HemN_C | 0.51 | 42.0 | 3.63e-01 | 100.0% | 56.2% |
| 3644046 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.50 | 35.0 | 3.32e-01 | 76.6% | 53.8% |