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IMGVR_UViG_3300045988_008371-3300045988-Ga0495776_102399_6726_6854
Arc-VirIMGVR_UViG_3300045988_008371-3300045988-Ga0495776_102399_6726_6854
Identity
- Kingdom:
- archaea
Quality
76.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-41
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t1vA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 53.0 | 3.82e-01 | 97.1% | 45.2% |
| 3mteA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.61 | 45.0 | 2.92e-01 | 97.1% | 58.4% |
| 17gsA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 47.0 | 3.43e-01 | 94.3% | 83.8% |
| 1jfkA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.57 | 41.0 | 3.86e-01 | 85.7% | 72.0% |
| 5tvfD00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.57 | 43.0 | 2.59e-01 | 85.7% | 28.9% |
| 1b48A01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 38.0 | 2.81e-01 | 97.1% | 26.0% |
| 4iggB06 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 42.0 | 2.62e-01 | 100.0% | 25.6% |
| 1t3uA01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.51 | 34.0 | 3.30e-01 | 100.0% | 53.5% |
| 4ottA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.50 | 37.0 | 2.79e-01 | 100.0% | 62.8% |
| 2vlaA02 | 1.10.1740.180 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.50 | 40.0 | 3.09e-01 | 88.6% | 80.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4060462 | 69.1.1.4 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing | 0.74 | 58.0 | 3.38e-01 | 85.7% | 48.6% |
| 3177802 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 53.0 | 4.69e-01 | 100.0% | 56.4% |
| 3460694 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.65 | 49.0 | 3.95e-01 | 100.0% | 39.2% |
| 3654198 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.62 | 52.0 | 3.03e-01 | 97.1% | 10.1% |
| 3637672 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.62 | 47.0 | 4.54e-01 | 94.3% | 84.4% |
| 4944366 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.62 | 47.0 | 3.26e-01 | 82.9% | 45.0% |
| 5028121 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 49.0 | 3.41e-01 | 100.0% | 25.4% |
| 3331594 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 39.0 | 2.99e-01 | 71.4% | 80.0% |
| 4026273 | 6108.1.1.11 ↗ | alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Dynamin_N | 0.54 | 47.0 | 2.53e-01 | 100.0% | 42.5% |
| 3942871 | 633.23.1.11 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PqiA | 0.53 | 43.0 | 2.91e-01 | 100.0% | 26.5% |
| 3946883 | 633.23.1.11 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PqiA | 0.52 | 40.0 | 2.74e-01 | 94.3% | 72.3% |
| 3969385 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 43.0 | 3.44e-01 | 100.0% | 48.8% |
| 3964444 | 601.1.2.89 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PqiA | 0.52 | 43.0 | 2.85e-01 | 100.0% | 25.6% |
| 3942873 | 633.23.1.11 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PqiA | 0.51 | 36.0 | 2.61e-01 | 100.0% | 57.4% |