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IMGVR_UViG_3300045988_015829-3300045988-Ga0495776_141918_3_1391

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300045988_015829-3300045988-Ga0495776_141918_3_1391 ↗
Kingdom:: archaea

Quality

79.0 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-159

PDB

Domain cluster: representative

CATH (24)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2mysA01	2.30.30.360	Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal	0.79	38.0	5.34e-01	71.8%	100.0%
5ygbA02	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.78	50.0	5.59e-01	78.6%	83.7%
2digA00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.77	45.0	5.34e-01	74.8%	86.8%
2gfaB01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.77	46.0	5.77e-01	78.6%	100.0%
2fhdA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.73	42.0	5.19e-01	74.8%	93.5%
5ycqA00	2.30.30.390	Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain	0.73	47.0	5.39e-01	83.5%	88.3%
4qqgG00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.73	48.0	5.70e-01	80.6%	97.2%
6az1E03	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.71	42.0	4.94e-01	78.6%	84.7%
3urgA02	2.30.30.530	Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain	0.70	42.0	5.18e-01	72.8%	98.4%
7oc3A01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.69	48.0	5.11e-01	77.7%	80.4%
3j7aF03	2.30.30.30	Mainly Beta › Roll › SH3 type barrels. ›	0.65	42.0	4.93e-01	76.7%	95.8%
1z47A03	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.64	28.0	4.18e-01	70.9%	91.8%
2vknA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.64	38.0	4.59e-01	78.6%	92.4%
2gfuA00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.63	50.0	4.61e-01	85.4%	81.3%
3hwuA00	3.30.1330.80	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2	0.60	49.0	4.45e-01	89.3%	72.9%
2hx0A01	3.30.1330.80	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2	0.57	46.0	4.25e-01	87.4%	75.8%
3htnB00	3.30.1330.80	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2	0.57	47.0	4.31e-01	92.2%	73.4%
3g1jA00	2.30.30.350	Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4.	0.56	43.0	4.61e-01	92.2%	94.4%
1b9mA03	2.40.50.100	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	0.56	31.0	3.72e-01	85.4%	80.3%
2gtlO02	2.40.128.620	Mainly Beta › Beta Barrel › Lipocalin ›	0.55	43.0	3.63e-01	81.6%	76.7%
2gtlM02	2.40.128.620	Mainly Beta › Beta Barrel › Lipocalin ›	0.54	42.0	3.57e-01	82.5%	76.5%
2gtlN02	2.40.128.620	Mainly Beta › Beta Barrel › Lipocalin ›	0.53	42.0	3.51e-01	83.5%	77.1%
3khpD01	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.51	36.0	3.35e-01	75.7%	89.0%
1njhA00	2.70.180.10	Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF	0.50	39.0	3.87e-01	81.6%	90.7%

ECOD (41)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5052257	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.78	46.0	5.79e-01	73.8%	100.0%
3741680	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.78	42.0	5.65e-01	73.8%	100.0%
3564972	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.75	48.0	5.60e-01	74.8%	94.3%
4241924	4.1.1.93 ↗	beta barrels › SH3 › SH3 › SH3 › 40S_S4_C	0.73	42.0	4.48e-01	73.8%	64.4%
3660358	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.72	42.0	5.31e-01	71.8%	100.0%
5073368	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.71	43.0	5.14e-01	81.6%	90.0%
3959531	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.71	45.0	5.31e-01	81.6%	94.3%
3767452	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.70	51.0	5.05e-01	75.7%	100.0%
3416672	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.70	54.0	5.51e-01	88.3%	83.0%
4605602	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.69	43.0	5.21e-01	71.8%	98.5%
3533770	4.1.1.101 ↗	beta barrels › SH3 › SH3 › SH3 › Tudor_2	0.68	45.0	4.51e-01	79.6%	66.7%
5029166	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.67	47.0	5.41e-01	73.8%	100.0%
4376886	4.1.1.241 ↗	beta barrels › SH3 › SH3 › SH3 › NifZ	0.67	48.0	5.41e-01	77.7%	96.2%
3174977	4.8.1.0 ↗	beta barrels › SH3 › Chromo domain-like › Chromo domain-like	0.67	48.0	4.99e-01	97.1%	81.1%
3433053	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.66	43.0	4.76e-01	70.9%	85.0%
3785385	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.66	48.0	5.08e-01	99.0%	86.7%
4013324	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.66	44.0	5.15e-01	72.8%	100.0%
4643742	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.65	50.0	5.49e-01	81.6%	100.0%
3899828	4.1.1.92 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_9	0.64	46.0	5.08e-01	92.2%	96.2%
3563220	4.1.1.220 ↗	beta barrels › SH3 › SH3 › SH3 › BAHCC1-like_Tudor	0.64	45.0	4.96e-01	81.6%	93.8%
3234923	4.1.1.92 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_9	0.63	38.0	4.72e-01	77.7%	100.0%
4505316	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.62	37.0	4.50e-01	78.6%	100.0%
2831843	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.61	41.0	4.12e-01	86.4%	67.3%
3982999	4.1.1.60 ↗	beta barrels › SH3 › SH3 › SH3 › YccV-like	0.61	48.0	4.93e-01	84.5%	90.0%
4255495	4.11.1.2 ↗	beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26	0.59	48.0	3.58e-01	87.4%	82.4%
3557677	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.58	38.0	4.47e-01	88.3%	98.6%
3677761	4111.1.1.2 ↗	a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC	0.57	48.0	4.50e-01	91.3%	80.8%
3770804	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.57	44.0	4.83e-01	82.5%	100.0%
3866907	1.1.5.0 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel	0.57	44.0	4.79e-01	83.5%	100.0%
5023617	4111.1.1.2 ↗	a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC	0.57	47.0	4.36e-01	91.3%	70.4%
4026274	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.56	44.0	3.99e-01	83.5%	96.4%
3636251	4.1.1.60 ↗	beta barrels › SH3 › SH3 › SH3 › YccV-like	0.55	48.0	4.62e-01	100.0%	81.7%
3907176	4.1.1.248 ↗	beta barrels › SH3 › SH3 › SH3 › CABIT	0.55	43.0	4.58e-01	88.3%	100.0%
4965849	3435.1.1.9 ↗	a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DUF4747	0.54	38.0	2.83e-01	72.8%	40.0%
5048974	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.54	41.0	4.06e-01	84.5%	76.4%
3992087	4.1.1.20 ↗	beta barrels › SH3 › SH3 › SH3 › BAH	0.54	49.0	4.12e-01	100.0%	82.4%
3733082	5.1.2.7 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130	0.53	39.0	2.72e-01	77.7%	69.4%
3246120	9.1.1.0 ↗	beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins	0.53	42.0	3.51e-01	87.4%	94.7%
3214741	243.1.1.0 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like	0.53	39.0	4.20e-01	77.7%	100.0%
3600469	10.13.1.0 ↗	beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A	0.52	39.0	3.44e-01	81.6%	89.6%
3480200	4.1.1.54 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_2	0.51	35.0	3.97e-01	74.8%	97.3%

D2 high residues 200-352

PDB

Domain cluster: rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171

Pfam (5)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00493.30 best	MCM	24.1	2.50e-05	98.0%	64.3%
PF07728.21	AAA_5	45.1	1.40e-11	86.9%	99.3%
PF00004.36	AAA	40.3	5.80e-10	82.3%	83.2%
PF00910.29	RNA_helicase	24.9	3.30e-05	71.2%	70.5%
PF01443.25	Viral_helicase1	22.7	1.10e-04	60.8%	32.5%

D3 medium residues 375-461

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3fxqB01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.69	42.0	4.15e-01	86.2%	57.8%
1zp2A01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.63	46.0	4.18e-01	77.0%	84.3%
2jqtA00	1.20.1280.40	Mainly Alpha › Up-down Bundle › Monooxygenase › HHA	0.53	32.0	3.81e-01	73.6%	91.2%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3460130	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.69	36.0	3.78e-01	80.5%	56.2%
3234570	3009.1.1.1 ↗	alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DSBA	0.57	39.0	2.98e-01	71.3%	30.2%
3221765	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.54	43.0	4.08e-01	83.9%	91.0%
3356998	109.4.1.81 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF-3c_N	0.52	40.0	2.56e-01	90.8%	56.4%
5057080	3352.1.1.0 ↗	alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain	0.51	41.0	2.73e-01	86.2%	69.4%