←Back to structures
IMGVR_UViG_3300045988_015829-3300045988-Ga0495776_141918_45670_46035
Arc-VirIMGVR_UViG_3300045988_015829-3300045988-Ga0495776_141918_45670_46035
Identity
- Kingdom:
- archaea
Quality
80.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-70
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lshB00 | 2.20.90.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain | 0.71 | 63.0 | 4.61e-01 | 100.0% | 70.1% |
| 4dsdA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.70 | 54.0 | 4.39e-01 | 84.8% | 78.6% |
| 4bboA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.63 | 54.0 | 4.63e-01 | 100.0% | 71.7% |
| 3wjcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.62 | 53.0 | 4.15e-01 | 100.0% | 47.7% |
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 41.0 | 4.20e-01 | 72.7% | 71.0% |
| 1p32B00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.62 | 55.0 | 4.04e-01 | 98.5% | 43.3% |
| 6muwH00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.61 | 46.0 | 3.33e-01 | 81.8% | 53.6% |
| 2ztgA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.61 | 44.0 | 3.07e-01 | 80.3% | 85.9% |
| 1cb8A02 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.61 | 49.0 | 3.41e-01 | 93.9% | 91.5% |
| 3ecfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 45.0 | 3.70e-01 | 81.8% | 48.4% |
| 3r90A00 | 3.10.400.20 | Alpha Beta › Roll › Sulfate adenylyltransferase › | 0.60 | 47.0 | 3.42e-01 | 86.4% | 65.9% |
| 8gzhC01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.59 | 50.0 | 3.70e-01 | 98.5% | 52.5% |
| 4agiA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.58 | 46.0 | 3.10e-01 | 93.9% | 56.1% |
| 4ipuA00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.57 | 42.0 | 3.41e-01 | 80.3% | 66.4% |
| 3qktD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 43.0 | 2.84e-01 | 83.3% | 35.5% |
| 4g59B00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.57 | 47.0 | 3.59e-01 | 93.9% | 79.8% |
| 1lf7A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.57 | 42.0 | 3.21e-01 | 80.3% | 89.6% |
| 4ao8A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 49.0 | 3.44e-01 | 100.0% | 58.1% |
| 6qp7A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 49.0 | 2.98e-01 | 100.0% | 49.0% |
| 1ohfA03 | 2.60.270.70 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.56 | 42.0 | 3.33e-01 | 80.3% | 62.4% |
| 1zo0A00 | 3.40.630.60 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › | 0.56 | 49.0 | 4.01e-01 | 100.0% | 86.5% |
| 1qw2A00 | 3.30.1980.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC | 0.56 | 45.0 | 3.97e-01 | 92.4% | 87.3% |
| 2opeA00 | 3.30.540.20 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › | 0.56 | 44.0 | 3.71e-01 | 90.9% | 74.2% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 42.0 | 4.03e-01 | 81.8% | 98.7% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.55 | 47.0 | 3.71e-01 | 100.0% | 69.8% |
| 1qwoA01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.55 | 44.0 | 2.73e-01 | 89.4% | 95.6% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 46.0 | 3.71e-01 | 100.0% | 57.6% |
| 5f7uA02 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.55 | 43.0 | 3.04e-01 | 89.4% | 60.2% |
| 3m2tA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 45.0 | 3.61e-01 | 100.0% | 52.0% |
| 3l9rA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 42.0 | 3.17e-01 | 89.4% | 74.9% |
| 1srqA01 | 3.30.1120.160 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.53 | 42.0 | 3.34e-01 | 86.4% | 71.7% |
| 3a7rA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.53 | 38.0 | 3.51e-01 | 86.4% | 58.4% |
| 1f2uA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 38.0 | 3.08e-01 | 81.8% | 79.2% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 37.0 | 3.68e-01 | 92.4% | 71.8% |
| 2b4wA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 44.0 | 2.96e-01 | 98.5% | 45.7% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.52 | 43.0 | 3.32e-01 | 100.0% | 49.7% |
| 2gxfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 38.0 | 3.23e-01 | 81.8% | 100.0% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 37.0 | 3.51e-01 | 83.3% | 63.1% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3690503 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.69 | 58.0 | 4.87e-01 | 90.9% | 56.0% |
| 3278402 | 71.2.1.1 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind | 0.69 | 57.0 | 4.13e-01 | 90.9% | 38.9% |
| 4008120 | 5.1.5.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 | 0.68 | 61.0 | 5.00e-01 | 100.0% | 60.8% |
| 3943894 | 77.1.1.7 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 | 0.68 | 61.0 | 4.92e-01 | 100.0% | 58.4% |
| 4401058 | 5087.1.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell | 0.67 | 58.0 | 4.27e-01 | 100.0% | 66.1% |
| 5045984 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.66 | 46.0 | 4.25e-01 | 72.7% | 77.6% |
| 3920675 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.66 | 43.0 | 4.10e-01 | 72.7% | 58.7% |
| 3486812 | 101.1.12.3 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N | 0.64 | 48.0 | 3.70e-01 | 81.8% | 94.8% |
| 3230461 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 50.0 | 4.02e-01 | 87.9% | 83.0% |
| 3830738 | 2004.1.1.480 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 | 0.63 | 46.0 | 2.81e-01 | 77.3% | 28.0% |
| 5035253 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.63 | 51.0 | 3.46e-01 | 93.9% | 85.8% |
| 4199709 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.61 | 48.0 | 3.40e-01 | 87.9% | 57.3% |
| 4408604 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.61 | 52.0 | 3.61e-01 | 100.0% | 33.2% |
| 4581803 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.61 | 52.0 | 3.79e-01 | 98.5% | 49.2% |
| 3577440 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.61 | 46.0 | 3.84e-01 | 81.8% | 97.4% |
| 5018922 | 7579.1.1.13 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DLH | 0.60 | 53.0 | 3.66e-01 | 100.0% | 49.4% |
| 3469979 | 12.3.1.43 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › NCU-G1 | 0.60 | 47.0 | 3.02e-01 | 87.9% | 56.6% |
| 3575800 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.60 | 49.0 | 3.99e-01 | 92.4% | 70.8% |
| 4268461 | 274.1.1.5 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor | 0.60 | 43.0 | 4.01e-01 | 77.3% | 63.5% |
| 5025094 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.59 | 48.0 | 3.98e-01 | 87.9% | 54.8% |
| 5028909 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.58 | 44.0 | 2.68e-01 | 83.3% | 23.1% |
| 4212114 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.58 | 50.0 | 3.73e-01 | 98.5% | 49.1% |
| 3376278 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.58 | 50.0 | 3.26e-01 | 100.0% | 43.8% |
| 4670897 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.58 | 41.0 | 3.32e-01 | 81.8% | 36.4% |
| 142988 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.57 | 40.0 | 3.66e-01 | 74.2% | 81.3% |
| 3268583 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.57 | 45.0 | 4.16e-01 | 86.4% | 97.6% |
| 3752441 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.57 | 43.0 | 3.56e-01 | 81.8% | 49.2% |
| 3812869 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.57 | 42.0 | 3.80e-01 | 83.3% | 70.0% |
| 1167757 | 2004.1.1.429 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 | 0.57 | 43.0 | 3.41e-01 | 83.3% | 76.9% |
| 151713 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.57 | 49.0 | 3.47e-01 | 100.0% | 55.9% |
| 3653947 | 71.1.1.17 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF28435 | 0.57 | 49.0 | 3.66e-01 | 100.0% | 93.9% |
| 4998774 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.56 | 42.0 | 2.59e-01 | 83.3% | 26.6% |
| 4972214 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 42.0 | 2.58e-01 | 83.3% | 24.2% |
| 3356246 | 5084.5.1.45 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF28482 | 0.56 | 47.0 | 3.44e-01 | 100.0% | 35.5% |
| 4982498 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 41.0 | 2.46e-01 | 81.8% | 20.0% |
| 4931992 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.56 | 39.0 | 3.79e-01 | 72.7% | 86.7% |
| 5047049 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.56 | 41.0 | 2.46e-01 | 83.3% | 19.3% |
| 4984958 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.56 | 41.0 | 2.65e-01 | 81.8% | 32.6% |
| 4978136 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 41.0 | 2.35e-01 | 81.8% | 15.2% |
| 3817220 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.56 | 43.0 | 2.81e-01 | 84.8% | 38.7% |
| 3408795 | 12.1.1.60 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Chitin_bind_4 | 0.55 | 40.0 | 4.14e-01 | 78.8% | 91.8% |
| 3318685 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.55 | 41.0 | 3.68e-01 | 86.4% | 76.2% |
| 4888729 | 243.19.1.0 ↗ | a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains | 0.55 | 45.0 | 3.97e-01 | 95.5% | 90.6% |
| 3712575 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.54 | 41.0 | 3.38e-01 | 81.8% | 45.2% |
| 3802306 | 284.1.2.0 ↗ | a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases | 0.54 | 41.0 | 3.78e-01 | 86.4% | 75.8% |
| 4956931 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.54 | 40.0 | 2.42e-01 | 81.8% | 22.0% |
| 3973700 | 243.19.1.0 ↗ | a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains | 0.54 | 45.0 | 4.11e-01 | 100.0% | 98.9% |
| 4667155 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.53 | 47.0 | 3.73e-01 | 100.0% | 63.8% |
| 4464658 | 274.1.1.59 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGG | 0.53 | 42.0 | 3.53e-01 | 87.9% | 51.8% |
| 4944680 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 39.0 | 2.30e-01 | 83.3% | 18.0% |
| 3295575 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.52 | 36.0 | 3.19e-01 | 84.8% | 48.0% |
| 4969674 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 43.0 | 2.81e-01 | 98.5% | 46.8% |
| 3937247 | 10.13.1.1 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase | 0.51 | 37.0 | 2.84e-01 | 78.8% | 80.0% |
| 4025325 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.51 | 35.0 | 3.67e-01 | 72.7% | 92.7% |
| 4031476 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.50 | 38.0 | 3.46e-01 | 89.4% | 99.0% |