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IMGVR_UViG_3300045988_036138-3300045988-Ga0495776_114579_21538_21876
Arc-VirIMGVR_UViG_3300045988_036138-3300045988-Ga0495776_114579_21538_21876
Identity
- Kingdom:
- archaea
Quality
69.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-106
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hngA00 | 3.10.420.10 | Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like | 0.67 | 37.0 | 3.49e-01 | 99.1% | 45.6% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 35.0 | 3.29e-01 | 92.5% | 46.0% |
| 1nrfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.59 | 47.0 | 3.58e-01 | 84.9% | 69.5% |
| 2g16B00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.59 | 35.0 | 3.08e-01 | 87.7% | 38.0% |
| 1a0sP00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.57 | 47.0 | 3.19e-01 | 89.6% | 71.2% |
| 2h36X00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 35.0 | 3.56e-01 | 92.5% | 62.0% |
| 3cygA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.56 | 44.0 | 4.29e-01 | 91.5% | 75.6% |
| 5eo6B00 | 3.40.1500.10 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic | 0.55 | 48.0 | 3.56e-01 | 99.1% | 44.3% |
| 5jenA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.54 | 41.0 | 4.11e-01 | 92.5% | 77.5% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 47.0 | 4.02e-01 | 97.2% | 66.1% |
| 1ex2A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.53 | 42.0 | 3.47e-01 | 84.0% | 50.8% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 42.0 | 2.91e-01 | 84.0% | 31.7% |
| 1vp2A00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.52 | 41.0 | 3.36e-01 | 84.0% | 52.9% |
| 7t4dA01 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.51 | 43.0 | 3.17e-01 | 92.5% | 93.9% |
| 2amhA00 | 3.90.950.10 | Alpha Beta › Alpha-Beta Complex › Maf protein › | 0.51 | 40.0 | 3.30e-01 | 84.0% | 94.4% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3663874 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.65 | 42.0 | 2.79e-01 | 91.5% | 16.8% |
| 3571382 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.64 | 43.0 | 2.77e-01 | 87.7% | 14.0% |
| 3276558 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.64 | 38.0 | 2.68e-01 | 81.1% | 20.7% |
| 3508989 | 2484.1.1.230 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 | 0.63 | 28.0 | 2.47e-01 | 70.8% | 27.1% |
| 3962269 | 2004.1.1.204 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 44.0 | 2.86e-01 | 70.8% | 27.7% |
| 4878467 | 271.1.1.1 ↗ | beta barrels › GFP-like › GFP-like › GFP-like › GFP | 0.63 | 37.0 | 3.91e-01 | 87.7% | 63.5% |
| 3531937 | 2484.1.1.317 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF28925 | 0.60 | 50.0 | 3.22e-01 | 90.6% | 78.0% |
| 3527214 | 2484.1.1.204 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 | 0.60 | 41.0 | 2.67e-01 | 87.7% | 15.4% |
| 3301688 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 50.0 | 3.28e-01 | 98.1% | 55.4% |
| 3413200 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 47.0 | 3.17e-01 | 93.4% | 59.8% |
| 3911505 | 3570.1.1.1 ↗ | a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI | 0.56 | 46.0 | 4.08e-01 | 91.5% | 95.0% |
| 3700544 | 331.9.1.3 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_b_Cpla | 0.54 | 41.0 | 3.87e-01 | 90.6% | 65.4% |
| 3590584 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.54 | 30.0 | 2.81e-01 | 99.1% | 42.2% |
| 3602503 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.52 | 32.0 | 3.10e-01 | 89.6% | 55.0% |
| 3243473 | 5087.1.1.0 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 | 0.52 | 39.0 | 3.03e-01 | 81.1% | 43.2% |
| 4031371 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.51 | 33.0 | 3.03e-01 | 93.4% | 50.0% |
| 3888744 | 3570.1.1.0 ↗ | a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily | 0.50 | 42.0 | 4.17e-01 | 91.5% | 85.2% |
| 5071482 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.50 | 32.0 | 3.04e-01 | 89.6% | 54.4% |