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IMGVR_UViG_3300045988_100814-3300045988-Ga0495776_182463_24256_25692

Arc-Vir

IMGVR_UViG_3300045988_100814-3300045988-Ga0495776_182463_24256_25692

Quality

85.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lszA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.76 59.0 4.41e-01 86.0% 44.0%
3nc3B00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.69 54.0 3.24e-01 88.0% 13.8%
3bujA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.65 50.0 3.00e-01 88.0% 13.1%
2pohA02 6.10.140.940 Special › Helix non-globular › Helix Hairpins › 0.62 48.0 4.29e-01 90.0% 58.4%
3dboB00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.60 42.0 3.20e-01 74.0% 46.0%
1loxA01 1.20.245.10 Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 0.57 46.0 2.77e-01 94.0% 54.5%
4bzaA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 41.0 3.57e-01 82.0% 79.7%
2bskE00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.53 38.0 3.67e-01 82.0% 69.8%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3591841 2007.1.19.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin 0.66 51.0 3.07e-01 84.0% 30.0%
D2 medium residues 75-112_332-416
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05133.20 best SPP1_portal 28.4 1.30e-06 70.7% 19.1%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1csmA00 1.10.590.10 Mainly Alpha › Orthogonal Bundle › Chorismate Mutase, subunit A › Chorismate mutase, AroQ class superfamily, eukaryotic 0.53 39.0 3.22e-01 80.5% 54.4%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511359 4038.1.1.0 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein 0.68 61.0 4.58e-01 100.0% 74.9%
4954546 4038.1.1.0 alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein 0.66 60.0 4.52e-01 100.0% 85.5%