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IMGVR_UViG_3300045988_164974-3300045988-Ga0495776_100560_14162_14425
Arc-VirIMGVR_UViG_3300045988_164974-3300045988-Ga0495776_100560_14162_14425
Identity
- Kingdom:
- archaea
Quality
82.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-64
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.88 | 52.0 | 4.50e-01 | 75.4% | 40.7% |
| 2mh3A00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.79 | 61.0 | 5.82e-01 | 88.5% | 72.9% |
| 2efkA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.75 | 52.0 | 3.29e-01 | 73.8% | 16.4% |
| 5nj8A01 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.73 | 57.0 | 6.06e-01 | 98.4% | 100.0% |
| 2gtsA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.73 | 50.0 | 4.60e-01 | 70.5% | 59.7% |
| 2lfhA00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.70 | 49.0 | 4.76e-01 | 86.9% | 66.2% |
| 4i9oA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.70 | 49.0 | 4.55e-01 | 82.0% | 57.7% |
| 4qclA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.70 | 50.0 | 3.22e-01 | 75.4% | 79.3% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 49.0 | 3.66e-01 | 73.8% | 34.0% |
| 3nrtA00 | 6.20.350.10 | Special › Other non-globular › Actin; Chain A, domain 4 › | 0.69 | 53.0 | 4.57e-01 | 82.0% | 74.2% |
| 4ad9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 40.0 | 3.54e-01 | 82.0% | 41.7% |
| 1rqlA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.68 | 47.0 | 3.36e-01 | 73.8% | 76.4% |
| 1u5eA01 | 6.10.250.220 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.65 | 40.0 | 4.29e-01 | 75.4% | 69.8% |
| 7ae2A01 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.64 | 53.0 | 4.15e-01 | 95.1% | 77.4% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.64 | 46.0 | 4.24e-01 | 75.4% | 63.6% |
| 1jqjC02 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.61 | 45.0 | 3.85e-01 | 78.7% | 54.2% |
| 1m6nA05 | 1.10.1200.230 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.61 | 51.0 | 4.54e-01 | 91.8% | 76.5% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 48.0 | 3.74e-01 | 88.5% | 88.7% |
| 2g8lA02 | 1.10.285.20 | Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 | 0.59 | 42.0 | 4.15e-01 | 75.4% | 84.6% |
| 2ynqB00 | 1.25.40.680 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain | 0.57 | 46.0 | 3.63e-01 | 98.4% | 78.1% |
| 1ewrA02 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.57 | 42.0 | 3.34e-01 | 78.7% | 69.7% |
| 2rbdA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 47.0 | 3.58e-01 | 93.4% | 53.3% |
| 3llwD00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 49.0 | 3.13e-01 | 100.0% | 51.2% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4520081 | 192.5.1.20 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › Val_tRNA-synt_C | 0.79 | 54.0 | 5.44e-01 | 70.5% | 73.3% |
| 3619662 | 192.12.1.3 ↗ | alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › DUF747 | 0.78 | 53.0 | 4.76e-01 | 70.5% | 55.0% |
| 3807618 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.77 | 47.0 | 4.97e-01 | 70.5% | 69.1% |
| 3805159 | 4099.1.1.11 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14 | 0.77 | 51.0 | 4.27e-01 | 70.5% | 42.0% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.75 | 51.0 | 4.33e-01 | 70.5% | 49.5% |
| 4456090 | 5086.1.1.94 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HB_LcnD | 0.75 | 51.0 | 3.40e-01 | 70.5% | 95.1% |
| 3178900 | 192.2.1.30 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Uds1 | 0.75 | 50.0 | 3.77e-01 | 70.5% | 32.4% |
| 4054285 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.73 | 50.0 | 2.90e-01 | 70.5% | 11.8% |
| 4968943 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.73 | 50.0 | 4.37e-01 | 73.8% | 50.6% |
| 3489407 | 148.1.1.4 ↗ | alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF | 0.72 | 51.0 | 4.63e-01 | 86.9% | 56.2% |
| 5020110 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.71 | 48.0 | 4.06e-01 | 70.5% | 48.0% |
| 3217457 | 105.1.1.1 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH | 0.70 | 52.0 | 4.68e-01 | 93.4% | 55.6% |
| 5014330 | 148.1.3.402 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rad50_zn_hook | 0.69 | 50.0 | 4.05e-01 | 82.0% | 41.8% |
| 3621681 | 604.1.1.139 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF7799 | 0.68 | 45.0 | 3.86e-01 | 80.3% | 44.2% |
| 3832771 | 2006.1.1.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5_nucleotid | 0.67 | 52.0 | 3.12e-01 | 82.0% | 14.5% |
| 3544489 | 192.1.1.12 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › PH_19 | 0.66 | 48.0 | 4.91e-01 | 77.0% | 81.7% |
| 3767940 | 192.15.1.43 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › PH_19 | 0.65 | 49.0 | 4.41e-01 | 78.7% | 60.0% |
| 3660913 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.65 | 44.0 | 3.86e-01 | 75.4% | 47.8% |
| 3642338 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.64 | 46.0 | 4.25e-01 | 75.4% | 70.7% |
| 3394753 | 192.5.1.12 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › PH_19 | 0.63 | 46.0 | 4.38e-01 | 77.0% | 67.1% |
| 4051951 | 605.2.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 | 0.62 | 44.0 | 3.83e-01 | 73.8% | 58.9% |
| 3989573 | 601.14.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin | 0.61 | 51.0 | 3.62e-01 | 100.0% | 58.1% |
| 3312373 | 148.1.3.207 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7751 | 0.61 | 53.0 | 4.50e-01 | 100.0% | 88.6% |
| 3062952 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 51.0 | 4.29e-01 | 98.4% | 76.0% |
| 3259416 | 3812.1.1.0 ↗ | alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE | 0.58 | 42.0 | 4.05e-01 | 75.4% | 65.7% |
| 4085341 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.56 | 49.0 | 4.21e-01 | 96.7% | 96.8% |
| 3636524 | 192.4.1.13 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Cactin_mid | 0.56 | 50.0 | 3.42e-01 | 100.0% | 85.7% |
| 3716271 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 49.0 | 3.35e-01 | 96.7% | 74.1% |
| 5075120 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.51 | 42.0 | 3.03e-01 | 91.8% | 81.1% |