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IMGVR_UViG_3300045988_170622-3300045988-Ga0495776_089014_101927_103726
Arc-VirIMGVR_UViG_3300045988_170622-3300045988-Ga0495776_089014_101927_103726
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-119
Domain cluster:
rep: IMGVR_UViG_3300020083_001453-3300020083-Ga0194111_100034933__D1-119
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07733.19 best | DNA_pol3_alpha | 74.1 | 2.00e-20 | 85.5% | 37.3% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qguB04 | 1.20.89.10 | Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 | 0.52 | 29.0 | 3.40e-01 | 83.8% | 75.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969389 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.92 | 84.0 | 6.10e-01 | 100.0% | 40.4% |
| 4156755 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.91 | 76.0 | 5.93e-01 | 100.0% | 45.5% |
| 5078968 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.90 | 86.0 | 6.42e-01 | 100.0% | 46.3% |
| 4064450 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.88 | 81.0 | 5.90e-01 | 100.0% | 41.1% |
| 4660116 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.88 | 83.0 | 6.03e-01 | 100.0% | 41.1% |
| 4142452 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.87 | 80.0 | 5.99e-01 | 100.0% | 44.4% |
| 1117589 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.87 | 84.0 | 5.86e-01 | 100.0% | 47.0% |
| 1312437 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.87 | 66.0 | 7.17e-01 | 86.3% | 92.9% |
| 3340080 | 103.4.1.2 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M | 0.60 | 42.0 | 4.19e-01 | 83.8% | 70.8% |
| 3644929 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.54 | 43.0 | 3.30e-01 | 86.3% | 45.2% |
D2
high
residues 499-597
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14579.13 best | HHH_6 | 87.1 | 1.00e-24 | 90.9% | 88.9% |
| PF04919.19 | DUF655 | 25.2 | 2.00e-05 | 55.6% | 19.3% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f2bA08 | 1.10.150.870 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.83 | 64.0 | 5.63e-01 | 85.9% | 57.7% |
| 3bzcA04 | 1.10.150.310 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tex RuvX-like domain-like | 0.66 | 54.0 | 4.90e-01 | 86.9% | 87.9% |
| 1uqtA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 44.0 | 3.38e-01 | 89.9% | 97.5% |
| 4jiuA00 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.52 | 39.0 | 3.84e-01 | 79.8% | 77.1% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963903 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.90 | 86.0 | 6.81e-01 | 100.0% | 80.6% |
| 3969044 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.89 | 85.0 | 6.49e-01 | 100.0% | 82.5% |
| 4641808 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.89 | 85.0 | 6.66e-01 | 100.0% | 78.9% |
| 3959918 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.88 | 85.0 | 6.20e-01 | 100.0% | 65.7% |
| 4208827 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.88 | 84.0 | 6.57e-01 | 100.0% | 84.7% |
| 3589922 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.88 | 84.0 | 6.82e-01 | 100.0% | 80.6% |
| 4061607 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.88 | 84.0 | 6.62e-01 | 100.0% | 79.5% |
| 4073066 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.88 | 84.0 | 6.70e-01 | 100.0% | 78.9% |
| 4356978 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.87 | 83.0 | 6.59e-01 | 100.0% | 81.7% |
| 4662943 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.87 | 83.0 | 6.79e-01 | 100.0% | 77.0% |
| 4288348 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.86 | 81.0 | 6.44e-01 | 100.0% | 78.9% |
| 4319349 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.86 | 82.0 | 6.57e-01 | 100.0% | 80.0% |
| 2132559 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.86 | 81.0 | 7.32e-01 | 99.0% | 78.9% |
| 3839743 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.85 | 80.0 | 6.25e-01 | 100.0% | 81.5% |
| 4321654 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.85 | 81.0 | 6.49e-01 | 100.0% | 58.9% |
| 4507346 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.85 | 72.0 | 6.14e-01 | 90.9% | 58.7% |
| 4145212 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.83 | 76.0 | 6.44e-01 | 98.0% | 74.8% |
| 4116235 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.82 | 78.0 | 6.82e-01 | 100.0% | 80.7% |
| 4060927 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.82 | 78.0 | 6.26e-01 | 100.0% | 80.6% |
| None | — | 0.82 | 50.0 | 6.23e-01 | 74.7% | 100.0% | |
| 3888570 | 102.1.1.25 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_3 | 0.81 | 55.0 | 6.25e-01 | 87.9% | 91.9% |
| 3989404 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.81 | 76.0 | 6.31e-01 | 100.0% | 75.6% |
| 4140769 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.81 | 75.0 | 6.17e-01 | 100.0% | 80.0% |
| 3969369 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.80 | 75.0 | 6.16e-01 | 100.0% | 80.0% |
| None | — | 0.80 | 75.0 | 5.97e-01 | 100.0% | 82.2% | |
| 4387225 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.80 | 75.0 | 6.08e-01 | 100.0% | 79.4% |
| 4228183 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.80 | 69.0 | 5.87e-01 | 91.9% | 83.2% |
| 4116376 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.80 | 75.0 | 6.27e-01 | 100.0% | 78.8% |
| 3987438 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.80 | 65.0 | 5.57e-01 | 91.9% | 55.5% |
| 4452667 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.80 | 75.0 | 6.11e-01 | 100.0% | 79.4% |
| 3586202 | 102.1.1.25 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_3 | 0.79 | 55.0 | 5.57e-01 | 89.9% | 71.0% |
| 3963646 | 102.1.1.25 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_3 | 0.79 | 54.0 | 6.13e-01 | 86.9% | 93.3% |
| 4162931 | 102.1.1.28 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_6 | 0.78 | 72.0 | 5.94e-01 | 100.0% | 79.4% |
| 3466033 | 102.1.1.25 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_3 | 0.69 | 43.0 | 4.64e-01 | 73.7% | 73.8% |
| 3246155 | 367.1.1.2 ↗ | few secondary structure elements › Insulin-like › Insulin-like › Insulin-like › Ins_beta | 0.54 | 27.0 | 3.47e-01 | 85.9% | 90.0% |
| 5061799 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.53 | 43.0 | 3.40e-01 | 89.9% | 45.6% |
| 3390790 | 2498.5.1.0 ↗ | mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like | 0.52 | 40.0 | 4.17e-01 | 81.8% | 98.9% |
| 3414358 | 2498.1.1.9 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 | 0.51 | 41.0 | 3.09e-01 | 86.9% | 37.1% |
| 5004191 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.51 | 42.0 | 3.36e-01 | 92.9% | 59.5% |
D3
medium
residues 150-270
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00124__D100-235
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07733.19 best | DNA_pol3_alpha | 41.8 | 1.40e-10 | 99.2% | 50.0% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p3lA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.50 | 41.0 | 2.98e-01 | 92.6% | 59.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969389 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.85 | 80.0 | 5.96e-01 | 100.0% | 46.9% |
| 4660116 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.84 | 79.0 | 5.87e-01 | 100.0% | 46.1% |
| 1117589 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.84 | 78.0 | 5.63e-01 | 100.0% | 40.6% |
| 4064450 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.83 | 76.0 | 5.78e-01 | 98.3% | 46.7% |
| 4156755 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.83 | 60.0 | 4.82e-01 | 99.2% | 40.9% |
| 4142452 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.83 | 70.0 | 5.36e-01 | 99.2% | 42.8% |
D4
medium
residues 274-355_477-498
Domain cluster:
rep: MK994522__QGH71213.1__X__00057__D648-728
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17657.7 best | DNA_pol3_finger | 51.6 | 9.80e-14 | 97.1% | 46.4% |
D5
medium
residues 356-476
Domain cluster:
rep: OQ436456.1__WEU67336.1__X__00069__D1-102
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17657.7 best | DNA_pol3_finger | 72.8 | 3.00e-20 | 62.8% | 45.8% |