Back to structures

IMGVR_UViG_3300045988_172190-3300045988-Ga0495776_110548_126117_126374

Arc-Vir

IMGVR_UViG_3300045988_172190-3300045988-Ga0495776_110548_126117_126374

Quality

84.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-74
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 56.0 5.95e-01 100.0% 89.4%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.74 56.0 5.93e-01 100.0% 90.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 58.0 5.61e-01 97.3% 79.5%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 5.59e-01 100.0% 79.1%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.69 53.0 4.02e-01 98.6% 34.5%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.65 39.0 4.40e-01 74.3% 77.6%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 43.0 3.64e-01 70.3% 74.8%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.62 56.0 5.16e-01 100.0% 81.7%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.60 44.0 3.37e-01 78.4% 36.4%
3ii7A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.59 46.0 3.08e-01 83.8% 45.5%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.80e-01 81.1% 94.3%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 50.0 4.03e-01 95.9% 94.6%
1rl1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 41.0 3.86e-01 74.3% 78.3%
1x2jA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.58 47.0 3.12e-01 87.8% 44.5%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.58 43.0 2.95e-01 98.6% 21.5%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.58 43.0 3.14e-01 81.1% 91.2%
1a87A01 3.30.1120.60 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Colicin 0.58 44.0 4.04e-01 82.4% 99.0%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 43.0 3.28e-01 79.7% 63.7%
1amiA04 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.57 43.0 3.10e-01 81.1% 84.6%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.57 47.0 3.27e-01 90.5% 38.6%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 41.0 3.80e-01 77.0% 70.7%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 42.0 3.37e-01 81.1% 75.0%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 47.0 3.31e-01 91.9% 75.3%
1txkA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 45.0 2.91e-01 91.9% 41.5%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 39.0 3.34e-01 73.0% 80.3%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.55 34.0 3.21e-01 85.1% 50.6%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.91e-01 89.2% 66.1%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.41e-01 95.9% 69.8%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 39.0 4.03e-01 77.0% 78.9%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 44.0 4.64e-01 94.6% 100.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 42.0 4.51e-01 85.1% 100.0%
3ednA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 41.0 3.51e-01 86.5% 97.8%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 3.98e-01 98.6% 94.3%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.54 47.0 2.90e-01 100.0% 33.0%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 4.11e-01 87.8% 79.5%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.17e-01 93.2% 70.3%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.53 35.0 3.22e-01 75.7% 49.5%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.53 47.0 4.13e-01 97.3% 94.5%
1epwA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.13e-01 93.2% 69.5%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 41.0 3.57e-01 89.2% 73.0%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 47.0 3.21e-01 100.0% 85.6%
1u9tA01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 39.0 3.11e-01 82.4% 82.3%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 37.0 3.50e-01 82.4% 61.5%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.52 39.0 3.66e-01 95.9% 64.9%
5gvyA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.52 38.0 3.19e-01 82.4% 96.6%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 3.82e-01 100.0% 93.4%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.51 42.0 3.39e-01 100.0% 97.2%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 45.0 3.83e-01 98.6% 90.8%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 2.72e-01 94.6% 74.0%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.51 42.0 3.44e-01 91.9% 59.1%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 40.0 3.18e-01 89.2% 98.8%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.50 42.0 3.57e-01 97.3% 75.2%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.50 45.0 4.27e-01 100.0% 93.3%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989574 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 62.0 5.93e-01 97.3% 70.6%
5015845 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.78 50.0 3.80e-01 75.7% 29.7%
4026408 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.78 61.0 5.48e-01 100.0% 62.0%
4041376 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 56.0 5.50e-01 100.0% 82.5%
4497740 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.67 42.0 4.59e-01 73.0% 78.3%
4073433 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 57.0 5.64e-01 100.0% 90.0%
3924377 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 45.0 5.06e-01 93.2% 100.0%
4945655 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 45.0 4.05e-01 73.0% 88.0%
3975862 220.1.1.104 beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.63 48.0 4.76e-01 82.4% 86.3%
4377781 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 55.0 5.42e-01 100.0% 92.5%
3969569 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 38.0 4.21e-01 71.6% 76.7%
3519594 223.2.1.19 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.61 42.0 3.31e-01 71.6% 67.1%
3839222 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 46.0 3.75e-01 81.1% 48.6%
3964664 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.60 39.0 4.04e-01 74.3% 70.6%
3942738 295.1.1.29 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.60 47.0 3.64e-01 82.4% 77.4%
4833287 205.1.1.35 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 0.59 48.0 4.31e-01 86.5% 87.1%
3825338 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 41.0 3.32e-01 71.6% 60.0%
3578208 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 40.0 4.55e-01 81.1% 96.4%
4432262 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.59 41.0 3.51e-01 73.0% 60.0%
3742788 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.59 41.0 3.67e-01 73.0% 69.5%
3737927 220.1.1.294 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26663 0.58 44.0 3.93e-01 82.4% 79.1%
5026836 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 37.0 3.79e-01 91.9% 67.1%
3928729 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.58 46.0 3.35e-01 86.5% 58.9%
3892091 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 40.0 2.96e-01 71.6% 44.7%
4204975 12.3.1.14 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.58 44.0 2.80e-01 81.1% 68.2%
3894385 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 45.0 2.98e-01 85.1% 35.2%
3985171 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 39.0 3.16e-01 70.3% 42.1%
3942573 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.54e-01 83.8% 98.3%
138326 101.1.8.2 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.57 47.0 3.82e-01 90.5% 66.9%
4594302 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 40.0 3.42e-01 71.6% 47.8%
3363301 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.57 44.0 2.87e-01 83.8% 40.3%
1877618 330.15.1.1 a+b two layers › dsRBD-like › VtrA protein periplasmic domain › VtrA protein periplasmic domain › VtrA_C 0.57 45.0 4.23e-01 95.9% 70.0%
4373021 2.4.1.6 beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.57 36.0 3.26e-01 71.6% 47.5%
4606688 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.56 40.0 4.05e-01 74.3% 80.0%
1117625 5.1.4.37 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.56 50.0 3.12e-01 100.0% 88.5%
5040236 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.56 49.0 3.40e-01 100.0% 67.9%
5006258 205.1.1.128 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › APS-reductase_C 0.56 44.0 3.49e-01 83.8% 60.0%
3949336 220.1.1.216 beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.55 45.0 3.96e-01 89.2% 63.6%
3987919 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.55 46.0 3.99e-01 89.2% 69.1%
4079885 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.55 45.0 4.16e-01 87.8% 82.1%
3924241 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 45.0 2.61e-01 90.5% 10.1%
3644584 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.55 40.0 3.25e-01 77.0% 45.7%
3346536 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.55 44.0 3.60e-01 89.2% 69.0%
3907176 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.55 47.0 4.46e-01 100.0% 91.1%
5056535 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 4.25e-01 100.0% 80.0%
3221538 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.82e-01 87.8% 42.2%
4029948 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.54 39.0 3.31e-01 74.3% 59.2%
3586827 274.1.1.25 a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF 0.54 45.0 3.82e-01 87.8% 65.2%
3631298 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.54 43.0 4.35e-01 97.3% 89.3%
3969959 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 46.0 4.29e-01 93.2% 86.7%
2984295 10.1.1.25 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N 0.54 45.0 3.35e-01 95.9% 68.4%
5064976 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 41.0 3.17e-01 82.4% 85.0%
157526 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 41.0 4.44e-01 87.8% 100.0%
3943796 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.53 39.0 3.84e-01 78.4% 71.2%
3754695 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 38.0 3.23e-01 75.7% 79.2%
3623785 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.52 40.0 3.99e-01 93.2% 82.7%
5035008 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.52 45.0 3.53e-01 98.6% 81.2%
3436240 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.52 45.0 3.01e-01 100.0% 94.3%
4159881 220.1.1.197 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.52 45.0 4.14e-01 93.2% 92.6%
3514750 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.52 44.0 3.89e-01 95.9% 74.5%
4988423 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.52 41.0 4.05e-01 89.2% 78.8%
3279508 283.1.1.4 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.51 45.0 3.77e-01 100.0% 54.8%
3210707 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.51 38.0 4.10e-01 87.8% 100.0%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 43.0 4.15e-01 94.6% 91.8%
5022798 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 41.0 2.54e-01 90.5% 13.9%
3958695 3484.1.1.2 a+b two layers › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Laminaripentaose-producing beta-1,3-glucanase insertion domain › Glyco_hydro_64 0.51 44.0 3.50e-01 100.0% 56.2%
4024730 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.50 45.0 4.29e-01 98.6% 96.5%
3787441 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 39.0 3.76e-01 93.2% 72.2%
2553270 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.50 39.0 3.98e-01 98.6% 90.4%
3743202 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.50 44.0 3.77e-01 98.6% 94.2%
3210421 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.50 44.0 3.47e-01 98.6% 86.5%
3881013 76.1.1.0 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.50 42.0 3.38e-01 97.3% 85.6%