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IMGVR_UViG_3300045988_172190-3300045988-Ga0495776_110548_137138_137380

Arc-Vir

IMGVR_UViG_3300045988_172190-3300045988-Ga0495776_110548_137138_137380

Quality

76.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-73
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4twlA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.71 56.0 3.87e-01 84.7% 29.7%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.69 52.0 3.36e-01 80.6% 96.7%
4epcA01 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.58e-01 72.2% 88.9%
2pvaA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.67 50.0 3.23e-01 80.6% 91.2%
2oqcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.67 51.0 3.31e-01 81.9% 91.8%
2bjfA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.67 51.0 3.30e-01 81.9% 95.0%
2hezA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.67 50.0 3.26e-01 80.6% 94.9%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 46.0 4.07e-01 83.3% 49.5%
2rl8A00 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.62 47.0 3.72e-01 80.6% 45.9%
2pimA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 53.0 4.42e-01 97.2% 94.7%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.39e-01 100.0% 83.1%
3hbcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.61 55.0 3.60e-01 100.0% 50.5%
1lbvA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.61 54.0 4.40e-01 100.0% 91.3%
2p3nA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.61 54.0 4.40e-01 100.0% 91.9%
2qqzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 37.0 3.22e-01 75.0% 39.1%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.59 51.0 3.98e-01 98.6% 56.4%
3qmfA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 52.0 4.30e-01 100.0% 88.1%
4e6fA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.58 51.0 3.88e-01 98.6% 70.2%
2dayA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.58 50.0 4.39e-01 100.0% 81.4%
5c33A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.57 48.0 3.65e-01 94.4% 67.2%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.57 48.0 4.61e-01 93.1% 82.9%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.57 48.0 4.29e-01 100.0% 75.5%
4jerA00 3.30.1500.10 Alpha Beta › 2-Layer Sandwich › Heme-binding Protein A; Chain: A; › Haem-binding HasA 0.56 46.0 3.43e-01 90.3% 49.2%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.34e-01 75.0% 69.1%
1rwiA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 46.0 3.19e-01 93.1% 29.7%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.56 39.0 3.34e-01 73.6% 48.7%
2r19A00 2.60.450.10 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain 0.56 47.0 3.96e-01 100.0% 84.4%
4a0tA01 6.20.80.10 Special › Other non-globular › Glycosyl hydrolase fold › 0.56 38.0 4.11e-01 87.5% 85.2%
3l2hA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 41.0 3.27e-01 79.2% 81.0%
2yeqA02 3.60.21.70 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Alkaline phosphatase D (PhoD) 0.55 44.0 2.76e-01 88.9% 26.2%
2bsyA01 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.55 45.0 3.64e-01 98.6% 44.9%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.55 43.0 2.84e-01 87.5% 38.3%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 43.0 3.59e-01 83.3% 84.2%
2laeA00 3.30.310.170 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC 0.55 48.0 4.10e-01 100.0% 72.0%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 47.0 3.36e-01 97.2% 37.6%
1n7oA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.54 44.0 4.24e-01 93.1% 78.8%
3h8vB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 43.0 3.02e-01 86.1% 83.8%
2o3oA02 3.30.310.160 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YycH protein, domain 2 0.53 44.0 3.69e-01 88.9% 60.0%
1gxrA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.93e-01 94.4% 31.6%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.53 46.0 3.12e-01 100.0% 46.5%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 46.0 3.54e-01 100.0% 60.6%
1ux6A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.19e-01 93.1% 83.7%
2bjiA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.52 40.0 3.31e-01 87.5% 68.8%
1xy7B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 36.0 3.06e-01 80.6% 43.4%
3obfA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 43.0 3.29e-01 97.2% 72.2%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4031896 210.1.2.2 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH 0.71 56.0 3.57e-01 83.3% 92.6%
5007173 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.71 55.0 3.82e-01 84.7% 51.2%
3981268 210.1.2.2 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH 0.67 52.0 3.38e-01 84.7% 92.9%
349797 210.1.2.2 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH 0.67 52.0 3.32e-01 83.3% 92.1%
4525386 210.1.2.2 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH 0.66 51.0 3.35e-01 83.3% 92.8%
4587271 9002.1.1.1 a/b three-layered sandwiches › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 › ATP-grasp_6 0.65 42.0 4.78e-01 100.0% 94.0%
5003472 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.64 51.0 4.06e-01 84.7% 86.7%
3940673 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 49.0 4.11e-01 86.1% 69.6%
3767166 79.1.1.31 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › ITI_HC_C 0.62 49.0 4.41e-01 84.7% 63.2%
3683635 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.62 55.0 4.30e-01 100.0% 85.8%
3947013 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 55.0 5.13e-01 100.0% 92.2%
3625247 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.61 52.0 4.54e-01 98.6% 61.8%
3671794 4286.1.1.1 beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.60 51.0 4.42e-01 98.6% 88.3%
3929799 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.60 37.0 3.73e-01 77.8% 60.0%
None 0.60 47.0 3.04e-01 84.7% 86.0%
3964810 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.60 52.0 4.24e-01 98.6% 93.6%
3838397 3523.1.1.2 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N 0.59 49.0 4.01e-01 93.1% 77.1%
3295291 4286.1.1.1 beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.59 51.0 4.43e-01 100.0% 80.0%
3386379 3523.1.1.2 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N 0.59 44.0 3.74e-01 83.3% 56.9%
4559431 331.22.1.2 a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 0.59 50.0 3.65e-01 100.0% 45.0%
3550365 331.23.1.2 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › IntS9_C 0.58 48.0 4.70e-01 100.0% 82.1%
3488438 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.58 44.0 3.69e-01 80.6% 58.3%
3215615 11.1.1.532 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.58 50.0 4.42e-01 100.0% 88.2%
4236828 331.22.1.2 a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 0.58 49.0 3.72e-01 100.0% 48.2%
1806521 331.3.1.50 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF29358 0.58 49.0 4.21e-01 100.0% 66.9%
4958290 2003.1.1.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.58 43.0 2.73e-01 77.8% 35.9%
4934604 2003.1.1.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.57 53.0 3.38e-01 100.0% 41.3%
3433410 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.57 46.0 3.14e-01 93.1% 31.5%
3635908 220.1.1.153 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 0.57 47.0 3.80e-01 94.4% 66.2%
5048688 288.1.1.2 a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CheD 0.56 47.0 3.63e-01 93.1% 97.0%
4956654 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.56 51.0 3.69e-01 100.0% 68.2%
3226200 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 45.0 3.50e-01 90.3% 81.2%
3895500 6129.1.1.11 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › ITI_HC_C 0.55 49.0 3.37e-01 97.2% 59.2%
3735005 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.55 48.0 3.41e-01 100.0% 59.6%
4522129 331.3.1.8 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.54 48.0 4.09e-01 100.0% 76.7%
3618665 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.54 45.0 2.92e-01 93.1% 30.1%
3885864 5.1.3.135 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.54 43.0 2.76e-01 86.1% 25.2%
3796766 5.1.4.237 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_2nd 0.54 47.0 2.90e-01 94.4% 29.0%
4023327 9.2.1.3 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › FBO_C 0.54 45.0 3.42e-01 100.0% 85.0%
4059795 331.3.1.8 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.54 47.0 4.07e-01 100.0% 73.9%
3235793 708.1.1.31 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › PF29684 0.54 39.0 4.00e-01 88.9% 80.0%
3240085 5.1.4.270 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_WDR36-Utp21_2nd 0.54 46.0 2.92e-01 97.2% 36.8%
3575278 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 45.0 3.55e-01 94.4% 67.7%
3921165 4004.1.1.0 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.53 47.0 3.70e-01 98.6% 71.3%
3969104 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.53 36.0 3.70e-01 100.0% 74.3%
3609033 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 42.0 2.66e-01 90.3% 91.9%
3579675 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 43.0 3.66e-01 93.1% 85.8%
3924117 5.1.4.237 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_2nd 0.52 44.0 2.87e-01 97.2% 82.6%
4994583 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.52 40.0 2.68e-01 83.3% 45.6%
4022290 511.1.1.2 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › PF27034 0.50 39.0 3.33e-01 90.3% 94.8%
4027220 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.50 44.0 4.33e-01 100.0% 95.0%
4932491 221.1.2.7 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › RS4NT 0.50 39.0 3.46e-01 86.1% 87.3%
3388896 79.1.1.27 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › MORN 0.50 41.0 3.18e-01 88.9% 42.0%