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IMGVR_UViG_3300045988_172190-3300045988-Ga0495776_110548_138971_139219
Arc-VirIMGVR_UViG_3300045988_172190-3300045988-Ga0495776_110548_138971_139219
Identity
- Kingdom:
- archaea
Quality
76.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-81
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.70 | 48.0 | 5.11e-01 | 100.0% | 81.2% |
| 3dgpA00 | 3.30.70.2610 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.70 | 45.0 | 5.01e-01 | 83.5% | 83.9% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.67 | 45.0 | 4.86e-01 | 100.0% | 83.6% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.62 | 42.0 | 3.66e-01 | 72.2% | 45.5% |
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.60 | 41.0 | 4.39e-01 | 73.4% | 83.6% |
| 4oo2A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.59 | 48.0 | 3.66e-01 | 93.7% | 81.6% |
| 1dq3A04 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.58 | 42.0 | 3.73e-01 | 77.2% | 75.4% |
| 2yyiA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.57 | 48.0 | 3.60e-01 | 94.9% | 70.1% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.57 | 41.0 | 4.27e-01 | 75.9% | 84.9% |
| 1qupA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 42.0 | 4.43e-01 | 94.9% | 91.4% |
| 2kt2A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 44.0 | 4.69e-01 | 97.5% | 100.0% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 40.0 | 4.15e-01 | 86.1% | 83.3% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 46.0 | 4.58e-01 | 100.0% | 89.0% |
| 2gqcA01 | 3.30.70.2080 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 36.0 | 4.11e-01 | 81.0% | 94.6% |
| 1f0jA00 | 1.10.1300.10 | Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain | 0.55 | 47.0 | 3.15e-01 | 97.5% | 53.8% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.55 | 44.0 | 4.00e-01 | 91.1% | 92.1% |
| 4q6rA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 40.0 | 3.40e-01 | 83.5% | 45.8% |
| 2doaA00 | 1.10.10.2670 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › E3 ubiquitin-protein ligase | 0.55 | 39.0 | 3.62e-01 | 74.7% | 78.8% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 46.0 | 4.45e-01 | 100.0% | 83.1% |
| 2i8eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 44.0 | 4.55e-01 | 100.0% | 95.9% |
| 3fz5B00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 42.0 | 3.25e-01 | 97.5% | 35.7% |
| 2w00A05 | 1.20.58.2040 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 38.0 | 3.53e-01 | 100.0% | 56.4% |
| 2qxfA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 42.0 | 3.25e-01 | 86.1% | 53.6% |
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 40.0 | 4.35e-01 | 91.1% | 98.4% |
| 3netB01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 46.0 | 3.07e-01 | 94.9% | 36.9% |
| 1x60A01 | 3.30.70.1070 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat | 0.53 | 42.0 | 4.38e-01 | 100.0% | 95.8% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 31.0 | 3.20e-01 | 89.9% | 60.8% |
| 3jamK00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 45.0 | 4.23e-01 | 100.0% | 79.2% |
| 1ybtB00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 45.0 | 3.61e-01 | 100.0% | 83.1% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 39.0 | 3.29e-01 | 82.3% | 63.0% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.52 | 45.0 | 4.32e-01 | 100.0% | 91.5% |
| 1eluA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 36.0 | 3.24e-01 | 84.8% | 50.4% |
| 1wexA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 42.0 | 4.32e-01 | 96.2% | 100.0% |
| 3ezjA03 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.51 | 32.0 | 3.66e-01 | 84.8% | 92.7% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 39.0 | 3.65e-01 | 86.1% | 66.3% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 4.17e-01 | 100.0% | 89.4% |
| 3gv5B01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.50 | 43.0 | 3.73e-01 | 100.0% | 97.7% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4963272 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 47.0 | 4.37e-01 | 70.9% | 62.0% |
| 3533206 | 3696.1.1.1 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP | 0.67 | 45.0 | 4.83e-01 | 87.3% | 83.1% |
| 3229861 | 3696.1.1.1 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP | 0.66 | 47.0 | 4.99e-01 | 91.1% | 85.7% |
| 4453821 | 3253.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA | 0.66 | 38.0 | 4.60e-01 | 89.9% | 100.0% |
| 4986306 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.65 | 44.0 | 4.85e-01 | 100.0% | 93.3% |
| 4327654 | 327.16.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF29189 | 0.63 | 44.0 | 4.92e-01 | 83.5% | 96.7% |
| 4955372 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 46.0 | 4.17e-01 | 79.7% | 77.3% |
| 3975095 | 327.16.1.10 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF29189 | 0.62 | 43.0 | 4.84e-01 | 82.3% | 96.7% |
| 4407103 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.62 | 44.0 | 4.88e-01 | 87.3% | 98.3% |
| 4028694 | 306.3.1.0 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like | 0.62 | 40.0 | 4.33e-01 | 87.3% | 81.5% |
| 3497062 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 48.0 | 3.34e-01 | 91.1% | 26.1% |
| 4937548 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.58 | 39.0 | 4.39e-01 | 87.3% | 98.2% |
| 3913514 | 109.4.1.846 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Stereocilin | 0.58 | 44.0 | 3.28e-01 | 83.5% | 52.7% |
| 5010613 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.58 | 40.0 | 4.29e-01 | 98.7% | 87.7% |
| 3300459 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.58 | 41.0 | 3.12e-01 | 75.9% | 91.0% |
| 4013939 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 49.0 | 3.91e-01 | 96.2% | 79.4% |
| 4011979 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 49.0 | 4.24e-01 | 96.2% | 73.6% |
| 3399106 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 35.0 | 4.02e-01 | 96.2% | 94.0% |
| 3731261 | 101.1.2.520 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7779 | 0.57 | 45.0 | 4.31e-01 | 87.3% | 76.8% |
| 4534098 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.57 | 41.0 | 3.32e-01 | 79.7% | 45.7% |
| 5008813 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 42.0 | 3.44e-01 | 83.5% | 46.7% |
| 4965712 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.55 | 45.0 | 4.25e-01 | 89.9% | 77.9% |
| 5019931 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 46.0 | 3.81e-01 | 97.5% | 64.0% |
| 3738832 | 101.1.2.183 ↗ | alpha arrays › HTH › HTH › winged helix domain › MUS81-like_WH | 0.54 | 41.0 | 3.90e-01 | 82.3% | 75.8% |
| 5035636 | 304.26.1.1 ↗ | a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP | 0.54 | 46.0 | 4.35e-01 | 100.0% | 77.0% |
| 3304324 | 101.1.2.106 ↗ | alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 | 0.54 | 43.0 | 3.63e-01 | 87.3% | 74.8% |
| 4365970 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.53 | 43.0 | 3.95e-01 | 92.4% | 80.9% |
| 5039209 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.53 | 34.0 | 3.92e-01 | 84.8% | 94.5% |
| 3844936 | 101.1.1.273 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26094 | 0.53 | 42.0 | 4.30e-01 | 83.5% | 100.0% |
| 4951345 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.67e-01 | 94.9% | 60.0% |
| 5065568 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 44.0 | 3.85e-01 | 97.5% | 76.9% |
| 4642900 | 331.5.1.1 ↗ | a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 | 0.53 | 44.0 | 3.90e-01 | 96.2% | 98.3% |
| 3741490 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.52 | 38.0 | 3.72e-01 | 79.7% | 70.6% |
| 5063358 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 3.84e-01 | 88.6% | 94.3% |
| 3582025 | 386.1.1.1 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 | 0.52 | 30.0 | 2.82e-01 | 94.9% | 46.0% |
| 4999991 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 40.0 | 3.55e-01 | 94.9% | 57.4% |
| 3646165 | 101.1.2.245 ↗ | alpha arrays › HTH › HTH › winged helix domain › PORR | 0.52 | 37.0 | 3.46e-01 | 75.9% | 67.0% |
| 4997435 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 44.0 | 3.95e-01 | 94.9% | 75.5% |
| 5054757 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 42.0 | 3.77e-01 | 97.5% | 73.2% |
| 4195219 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.50 | 40.0 | 3.80e-01 | 91.1% | 86.0% |
| 5073003 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.50 | 40.0 | 3.04e-01 | 94.9% | 81.7% |
| 2713319 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.50 | 35.0 | 3.83e-01 | 82.3% | 90.8% |