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IMGVR_UViG_3300045988_172190-3300045988-Ga0495776_110548_71191_71955
Arc-VirIMGVR_UViG_3300045988_172190-3300045988-Ga0495776_110548_71191_71955
Identity
- Kingdom:
- archaea
Quality
56.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-135
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.82 | 55.0 | 6.57e-01 | 73.5% | 98.9% |
| 3h7lA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 28.0 | 3.31e-01 | 99.2% | 63.4% |
| 4bgjA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 26.0 | 2.77e-01 | 90.9% | 47.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 77927 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.82 | 56.0 | 6.66e-01 | 74.2% | 97.9% |
| 3215217 | 821.1.1.7 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG | 0.69 | 64.0 | 5.92e-01 | 100.0% | 87.3% |
| 3505268 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.67 | 58.0 | 5.78e-01 | 90.9% | 97.8% |
| 3622513 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 24.0 | 3.42e-01 | 75.0% | 78.3% |
| 3605920 | 1189.1.1.2 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG_B | 0.56 | 39.0 | 2.88e-01 | 71.2% | 86.9% |
| 4630084 | 192.10.1.0 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain | 0.52 | 22.0 | 2.67e-01 | 83.3% | 55.6% |
D2
high
residues 148-190
D3
high
residues 199-252