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IMGVR_UViG_3300045988_179044-3300045988-Ga0495776_047128_33397_33762

Arc-Vir

IMGVR_UViG_3300045988_179044-3300045988-Ga0495776_047128_33397_33762

Quality

63.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-121
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 45.0 3.73e-01 76.0% 95.7%
2basA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 51.0 4.40e-01 88.0% 77.6%
3ffzA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.62 49.0 3.75e-01 86.7% 83.7%
4i1kA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.61 43.0 3.75e-01 100.0% 47.5%
4kqdB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 50.0 4.27e-01 88.0% 82.8%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.60 47.0 3.84e-01 100.0% 45.7%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.60 46.0 3.69e-01 82.7% 87.6%
2laeA00 3.30.310.170 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Outer membrane protein assembly factor BamC 0.60 53.0 4.59e-01 100.0% 83.1%
4wyqB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 39.0 3.94e-01 72.0% 65.3%
5akpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 47.0 3.94e-01 85.3% 72.1%
3fg8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 48.0 4.26e-01 86.7% 88.7%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.59 48.0 3.84e-01 89.3% 64.2%
6g1yA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 46.0 3.88e-01 82.7% 71.7%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.59 49.0 4.19e-01 89.3% 72.8%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.59 48.0 3.68e-01 89.3% 61.8%
1odhA01 2.20.25.670 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain 0.58 47.0 4.85e-01 97.3% 93.0%
3ttgA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.58 49.0 3.19e-01 100.0% 20.8%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.57 45.0 4.74e-01 84.0% 95.5%
3ck2A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 43.0 3.29e-01 82.7% 55.7%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.56 46.0 3.92e-01 89.3% 67.2%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 42.0 3.87e-01 82.7% 85.0%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 43.0 3.95e-01 85.3% 83.0%
3oh8A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 48.0 3.95e-01 100.0% 84.3%
1m3qA01 3.30.310.40 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.55 45.0 4.27e-01 100.0% 77.5%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 39.0 3.11e-01 77.3% 81.1%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 43.0 3.75e-01 90.7% 79.3%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 47.0 3.94e-01 100.0% 81.5%
2biiA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.38e-01 92.0% 78.8%
4puxA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.53 41.0 3.29e-01 85.3% 91.7%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 32.0 3.40e-01 70.7% 66.2%
1e3uD00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 43.0 3.07e-01 90.7% 86.0%
3hpeA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.52 35.0 2.86e-01 70.7% 82.3%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.92e-01 81.3% 86.2%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.52 43.0 3.54e-01 92.0% 83.3%
3mfdA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 42.0 2.97e-01 89.3% 92.8%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 40.0 3.30e-01 86.7% 62.1%
1wfqA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.55e-01 78.7% 72.6%
1khdD02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.51 35.0 2.55e-01 72.0% 30.0%
2ehgA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 36.0 2.86e-01 74.7% 99.3%
1es2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 40.0 2.84e-01 90.7% 92.7%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 34.0 3.67e-01 80.0% 84.4%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5012403 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 48.0 3.71e-01 73.3% 56.4%
4522129 331.3.1.8 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.63 57.0 4.87e-01 100.0% 84.2%
4026643 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 38.0 3.68e-01 70.7% 54.1%
3173269 301.8.1.1 a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.63 51.0 4.28e-01 88.0% 88.8%
3017675 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 39.0 3.91e-01 72.0% 61.3%
3270915 223.2.1.1 a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.62 51.0 4.10e-01 89.3% 77.2%
4059795 331.3.1.8 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.62 56.0 4.83e-01 100.0% 84.3%
3842363 1.1.5.76 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.62 37.0 3.25e-01 88.0% 40.0%
4096825 331.3.1.8 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.61 55.0 4.78e-01 100.0% 85.2%
3213637 11.10.1.6 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.61 43.0 3.62e-01 73.3% 85.4%
4559432 331.3.1.8 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.61 55.0 4.64e-01 100.0% 80.8%
3565284 223.2.1.21 a+b three layers › Profilin-like › profilin-like › profilin-like › AP-5_subunit_s1 0.61 50.0 3.72e-01 92.0% 87.0%
4393589 331.3.1.8 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Lipoprotein_18 0.60 54.0 4.63e-01 100.0% 83.3%
4966557 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 52.0 3.40e-01 98.7% 27.9%
4882206 223.1.1.12 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.60 48.0 4.10e-01 86.7% 76.0%
3964461 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 53.0 4.58e-01 100.0% 90.8%
170035 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.59 48.0 4.40e-01 86.7% 96.9%
3280174 223.5.1.0 a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like 0.59 48.0 4.59e-01 86.7% 95.3%
3777156 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 47.0 3.76e-01 86.7% 67.3%
146717 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 34.0 3.09e-01 73.3% 42.9%
5065641 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 49.0 3.90e-01 92.0% 84.0%
4011406 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 46.0 3.61e-01 85.3% 61.9%
4958946 223.1.1.24 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.58 46.0 3.88e-01 85.3% 80.8%
3228522 390.1.1.7 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_3 0.58 45.0 3.86e-01 85.3% 55.2%
5021820 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 51.0 3.69e-01 100.0% 71.4%
4032017 2004.1.1.301 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 0.58 45.0 2.68e-01 97.3% 10.7%
3925426 220.1.1.176 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.57 47.0 3.82e-01 89.3% 63.6%
3667522 223.2.1.31 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.57 46.0 3.47e-01 88.0% 55.0%
5048999 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.57 49.0 4.08e-01 100.0% 60.7%
3223154 220.1.1.176 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.56 46.0 3.72e-01 88.0% 62.9%
3789432 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 41.0 2.58e-01 80.0% 28.0%
5011833 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 46.0 4.12e-01 89.3% 76.2%
3543887 330.1.1.6 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.56 42.0 3.80e-01 78.7% 88.0%
3262159 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 39.0 3.25e-01 73.3% 86.9%
3624850 331.9.1.9 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.56 48.0 4.34e-01 100.0% 68.6%
3961452 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 46.0 4.18e-01 98.7% 65.7%
2987309 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 38.0 3.83e-01 73.3% 70.3%
3474293 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 46.0 3.71e-01 92.0% 75.3%
5075672 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.55 44.0 3.13e-01 88.0% 46.8%
3379279 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 44.0 3.60e-01 88.0% 70.7%
3783714 331.1.1.5 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N 0.55 45.0 4.58e-01 98.7% 92.0%
5056920 2004.1.1.58 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase 0.54 44.0 2.88e-01 85.3% 30.2%
3536489 331.9.1.5 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP4E_app_platf 0.54 48.0 4.33e-01 100.0% 71.4%
3005998 5.1.4.15 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.54 47.0 2.86e-01 98.7% 86.2%
3976244 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 46.0 3.61e-01 100.0% 45.2%
3707715 331.18.1.0 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.54 47.0 3.75e-01 100.0% 67.5%
3585414 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.54 41.0 3.68e-01 84.0% 90.9%
3796013 220.1.1.176 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.54 44.0 3.64e-01 88.0% 66.9%
4968485 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.54 46.0 3.08e-01 98.7% 26.7%
3531090 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.54 44.0 3.41e-01 92.0% 68.6%
4951266 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.54 45.0 2.90e-01 97.3% 51.0%
4973114 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.53 37.0 3.43e-01 72.0% 82.1%
4558873 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.53 43.0 3.43e-01 89.3% 67.7%
5035119 331.16.1.1 a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 0.53 44.0 4.15e-01 98.7% 75.6%
5004807 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.53 45.0 2.88e-01 98.7% 52.2%
5007977 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.53 41.0 3.40e-01 85.3% 67.4%
3763927 331.9.1.9 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.52 45.0 4.05e-01 98.7% 68.8%
3222106 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 3.65e-01 89.3% 75.8%
5000881 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 43.0 3.37e-01 89.3% 62.6%
3926438 304.48.1.37 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.52 46.0 3.23e-01 100.0% 44.0%
4031371 264.2.1.1 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.52 44.0 3.63e-01 96.0% 67.1%
4017732 220.1.1.202 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.52 42.0 3.36e-01 89.3% 50.7%
4026900 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.52 45.0 3.97e-01 100.0% 69.6%
3215596 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 43.0 2.99e-01 92.0% 37.6%