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IMGVR_UViG_3300045988_182493-3300045988-Ga0495776_014213_28231_29466
Arc-VirIMGVR_UViG_3300045988_182493-3300045988-Ga0495776_014213_28231_29466
Identity
- Kingdom:
- archaea
Quality
75.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 73-122
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3igmA00 | 1.20.5.2050 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.68 | 42.0 | 4.09e-01 | 82.0% | 55.4% |
| 1i99I02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.64 | 41.0 | 3.23e-01 | 70.0% | 28.2% |
| 2fe0A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.63 | 48.0 | 3.81e-01 | 84.0% | 77.6% |
| 2cztA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.63 | 45.0 | 3.18e-01 | 76.0% | 25.2% |
| 3ndaA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.62 | 40.0 | 3.02e-01 | 72.0% | 24.2% |
| 1w9pA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.59 | 37.0 | 3.52e-01 | 100.0% | 50.8% |
| 3qokA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.59 | 49.0 | 4.10e-01 | 100.0% | 56.7% |
| 2nwvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.59 | 45.0 | 3.55e-01 | 84.0% | 42.9% |
| 1mpgA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.59 | 42.0 | 3.33e-01 | 82.0% | 34.8% |
| 4nqrA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 49.0 | 3.58e-01 | 100.0% | 90.3% |
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 40.0 | 3.94e-01 | 100.0% | 65.5% |
| 1o97D01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 45.0 | 3.19e-01 | 94.0% | 76.2% |
| 2kc8A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.56 | 39.0 | 3.31e-01 | 76.0% | 40.0% |
| 5jh8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 39.0 | 3.60e-01 | 100.0% | 55.2% |
| 3fetA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 44.0 | 3.22e-01 | 94.0% | 38.8% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.56 | 39.0 | 2.89e-01 | 76.0% | 27.9% |
| 2vseA03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 41.0 | 3.09e-01 | 84.0% | 61.0% |
| 1ah5A03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.55 | 41.0 | 3.63e-01 | 88.0% | 81.4% |
| 1fu1A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.55 | 43.0 | 3.50e-01 | 98.0% | 91.5% |
| 3ecrB03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.55 | 41.0 | 3.42e-01 | 88.0% | 83.3% |
| 4o9dA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 46.0 | 2.77e-01 | 100.0% | 87.5% |
| 6mw4A01 | 2.60.120.1290 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 37.0 | 2.82e-01 | 74.0% | 80.8% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 41.0 | 3.58e-01 | 88.0% | 69.9% |
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 35.0 | 3.81e-01 | 98.0% | 87.2% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 35.0 | 3.40e-01 | 100.0% | 60.7% |
| 3ijcA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 42.0 | 2.67e-01 | 100.0% | 61.3% |
| 1sxjH01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 43.0 | 3.43e-01 | 100.0% | 84.7% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 38.0 | 3.72e-01 | 98.0% | 68.4% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 43.0 | 2.85e-01 | 100.0% | 41.8% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.51 | 38.0 | 3.14e-01 | 84.0% | 51.9% |
| 4l2iA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 38.0 | 2.75e-01 | 96.0% | 72.7% |
| 4ofqA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 41.0 | 3.07e-01 | 100.0% | 88.4% |
| 2rk9B00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 37.0 | 2.97e-01 | 100.0% | 35.9% |
| 1ln1A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 42.0 | 2.88e-01 | 98.0% | 45.3% |
| 4mveA00 | 2.40.128.580 | Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain | 0.51 | 40.0 | 3.06e-01 | 100.0% | 55.8% |
| 2nlvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.51 | 37.0 | 3.01e-01 | 84.0% | 43.8% |
| 1b63A01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.50 | 40.0 | 2.74e-01 | 96.0% | 50.9% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3804385 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 52.0 | 4.86e-01 | 74.0% | 68.3% |
| 4034031 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.70 | 50.0 | 4.61e-01 | 76.0% | 83.1% |
| 3218417 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 50.0 | 4.27e-01 | 80.0% | 88.2% |
| 3703176 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.68 | 49.0 | 5.11e-01 | 96.0% | 88.6% |
| 4004358 | 252.2.1.3 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 | 0.67 | 43.0 | 4.36e-01 | 72.0% | 66.0% |
| 3312743 | 5.3.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop | 0.61 | 50.0 | 3.74e-01 | 100.0% | 42.0% |
| 5040759 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.61 | 49.0 | 3.40e-01 | 96.0% | 74.4% |
| 4861411 | 5.1.4.58 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF5074 | 0.61 | 46.0 | 2.86e-01 | 86.0% | 22.6% |
| 4983589 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.60 | 48.0 | 3.33e-01 | 96.0% | 72.5% |
| 6662 | 4276.1.1.1 ↗ | a+b two layers › XisI-like › XisI-like › XisI-like › XisI | 0.59 | 45.0 | 3.55e-01 | 84.0% | 42.9% |
| 4991866 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.59 | 48.0 | 3.25e-01 | 96.0% | 67.9% |
| 4972785 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 43.0 | 4.34e-01 | 78.0% | 100.0% |
| 3811267 | 10.1.1.58 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin | 0.59 | 49.0 | 3.26e-01 | 100.0% | 41.6% |
| 3251953 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 43.0 | 4.53e-01 | 80.0% | 95.6% |
| 3496489 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.59 | 41.0 | 4.25e-01 | 74.0% | 97.8% |
| 4933470 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.58 | 46.0 | 3.18e-01 | 96.0% | 71.2% |
| 3807026 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.57 | 49.0 | 3.26e-01 | 100.0% | 36.3% |
| 3189324 | 375.1.1.319 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Saf4_Yju2 | 0.57 | 41.0 | 3.72e-01 | 78.0% | 64.3% |
| 4604481 | 12.3.1.8 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N | 0.55 | 43.0 | 2.91e-01 | 94.0% | 92.5% |
| 3266673 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 41.0 | 2.66e-01 | 94.0% | 17.6% |
| 4011501 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.55 | 44.0 | 3.27e-01 | 94.0% | 93.8% |
| 4996783 | 2003.1.2.29 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 | 0.55 | 44.0 | 2.73e-01 | 98.0% | 42.8% |
| 3189994 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.54 | 38.0 | 3.19e-01 | 100.0% | 42.2% |
| 3642904 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.54 | 40.0 | 2.66e-01 | 88.0% | 26.7% |
| 4286628 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.53 | 36.0 | 2.73e-01 | 74.0% | 52.3% |
| 4051081 | 4.1.1.32 ↗ | beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID | 0.53 | 47.0 | 4.44e-01 | 100.0% | 81.7% |
| 4609498 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.52 | 37.0 | 3.34e-01 | 80.0% | 76.2% |
| 4983672 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 42.0 | 2.48e-01 | 100.0% | 31.6% |
| 3656396 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.52 | 40.0 | 2.92e-01 | 94.0% | 78.2% |
| 4992704 | 2003.1.2.40 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_oxidored | 0.52 | 41.0 | 2.54e-01 | 98.0% | 40.5% |
| 3495598 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.51 | 40.0 | 2.92e-01 | 90.0% | 52.0% |
| 3649433 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.51 | 35.0 | 2.95e-01 | 74.0% | 48.4% |
| 4549466 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.50 | 40.0 | 3.67e-01 | 94.0% | 100.0% |
| 3816490 | 1.1.1.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N | 0.50 | 35.0 | 2.23e-01 | 82.0% | 39.3% |
D2
high
residues 309-410
Domain cluster:
rep: OR521085.1__WNO28334.1__SEA_PSONYX_24__00024__D30-132
D3
medium
residues 6-59