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IMGVR_UViG_3300045988_183081-3300045988-Ga0495776_017089_30553_30738
Arc-VirIMGVR_UViG_3300045988_183081-3300045988-Ga0495776_017089_30553_30738
Identity
- Kingdom:
- archaea
Quality
87.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-53
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7drdG01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.70 | 58.0 | 3.71e-01 | 96.1% | 18.9% |
| 3o9zA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 50.0 | 3.84e-01 | 92.2% | 34.6% |
| 1ilyA00 | 3.30.420.100 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.64 | 52.0 | 4.45e-01 | 96.1% | 92.2% |
| 1yqeA02 | 3.40.50.10700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › AF0625-like | 0.64 | 52.0 | 4.29e-01 | 92.2% | 52.1% |
| 3ol4A02 | 1.10.10.2390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 51.0 | 4.95e-01 | 100.0% | 100.0% |
| 2fepA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 47.0 | 3.56e-01 | 90.2% | 39.3% |
| 4joqA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 50.0 | 3.62e-01 | 100.0% | 32.3% |
| 4ad8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 46.0 | 2.98e-01 | 92.2% | 34.4% |
| 2dk8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 49.0 | 4.63e-01 | 100.0% | 92.3% |
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.59 | 49.0 | 4.24e-01 | 98.0% | 76.5% |
| 2xvyA02 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 45.0 | 3.63e-01 | 94.1% | 71.0% |
| 1doqA00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.59 | 49.0 | 4.53e-01 | 98.0% | 76.8% |
| 4yleA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 45.0 | 3.40e-01 | 94.1% | 32.2% |
| 1y0bB01 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 48.0 | 3.36e-01 | 100.0% | 83.1% |
| 2o55A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.57 | 41.0 | 2.71e-01 | 88.2% | 15.7% |
| 3c3kA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 45.0 | 3.46e-01 | 96.1% | 35.5% |
| 2nlyA00 | 3.20.20.370 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase | 0.57 | 46.0 | 3.17e-01 | 98.0% | 65.7% |
| 4rrfA01 | 3.50.80.10 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase | 0.57 | 47.0 | 3.59e-01 | 100.0% | 47.1% |
| 7zllA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.56 | 44.0 | 2.96e-01 | 100.0% | 18.6% |
| 4m8kA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 45.0 | 3.07e-01 | 94.1% | 33.3% |
| 5dikA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.55 | 42.0 | 3.54e-01 | 98.0% | 52.7% |
| 6imeA01 | 3.40.1180.10 | Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like | 0.53 | 42.0 | 2.83e-01 | 100.0% | 22.9% |
| 6jytA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 41.0 | 3.06e-01 | 100.0% | 43.7% |
| 4rk4A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 41.0 | 3.17e-01 | 100.0% | 62.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3408608 | 2496.1.1.0 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like | 0.67 | 54.0 | 4.25e-01 | 96.1% | 70.8% |
| 4953833 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.63 | 52.0 | 4.58e-01 | 100.0% | 70.6% |
| 4476423 | 2002.1.1.76 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC | 0.63 | 48.0 | 3.22e-01 | 88.2% | 23.0% |
| 4939437 | 2003.1.1.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › AdoHcyase_NAD | 0.62 | 44.0 | 2.92e-01 | 86.3% | 17.0% |
| 4167098 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.62 | 47.0 | 3.95e-01 | 84.3% | 71.1% |
| 3943923 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.61 | 50.0 | 4.16e-01 | 100.0% | 57.0% |
| 2050092 | 2007.1.5.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › Amdase | 0.59 | 45.0 | 3.73e-01 | 96.1% | 50.4% |
| 4931426 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.57 | 46.0 | 3.32e-01 | 100.0% | 58.3% |
| 2134252 | 7572.1.1.1 ↗ | a/b three-layered sandwiches › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › PFK | 0.57 | 38.0 | 3.36e-01 | 70.6% | 45.2% |
| 3288850 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.54 | 40.0 | 3.33e-01 | 84.3% | 63.0% |
| 4966251 | 2006.1.4.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 | 0.54 | 46.0 | 3.18e-01 | 100.0% | 42.7% |
| 3541577 | 101.1.2.301 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF4616 | 0.53 | 39.0 | 3.61e-01 | 92.2% | 98.8% |
| 3634749 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 42.0 | 2.76e-01 | 96.1% | 33.8% |
| 55484 | 132.1.1.0 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) | 0.52 | 39.0 | 3.47e-01 | 82.4% | 84.4% |
| 3187391 | 5076.1.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier | 0.51 | 41.0 | 2.71e-01 | 94.1% | 33.9% |
| 4351607 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.50 | 42.0 | 3.32e-01 | 94.1% | 58.2% |
| 3188662 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.50 | 39.0 | 3.41e-01 | 88.2% | 75.9% |
| 145661 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.50 | 38.0 | 3.09e-01 | 80.4% | 64.0% |