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IMGVR_UViG_3300045988_183171-3300045988-Ga0495776_008845_16848_17216

Arc-Vir

IMGVR_UViG_3300045988_183171-3300045988-Ga0495776_008845_16848_17216

Identity

Kingdom:
archaea

Quality

81.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-116
PDB
Domain cluster: rep: IMGVR_UViG_3300013940_000139-3300013940-Ga0117807_100006633__D16-67
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.78 42.0 4.42e-01 93.1% 59.1%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.73 46.0 3.68e-01 93.1% 33.6%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 51.0 3.99e-01 100.0% 37.6%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 54.0 4.87e-01 100.0% 63.2%
2xwxA03 2.60.40.2550 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 49.0 4.35e-01 77.8% 76.5%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 46.0 4.17e-01 77.8% 78.1%
2i0rA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 49.0 3.07e-01 100.0% 17.4%
4oocA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.62 51.0 3.38e-01 87.5% 51.5%
2jraA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.61 32.0 3.96e-01 98.6% 85.7%
2py5A02 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.60 47.0 3.52e-01 86.1% 66.5%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 39.0 3.64e-01 86.1% 52.7%
2je6A01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.59 48.0 3.35e-01 93.1% 78.9%
2m4lA00 2.40.128.360 Mainly Beta › Beta Barrel › Lipocalin › 0.59 40.0 3.70e-01 81.9% 52.5%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.69e-01 77.8% 80.9%
3u1kC01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.58 49.0 3.59e-01 100.0% 79.6%
4pswA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 44.0 3.61e-01 95.8% 44.4%
2w91A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.61e-01 75.0% 69.9%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 37.0 3.17e-01 81.9% 44.1%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 51.0 4.32e-01 100.0% 76.3%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.55 49.0 3.16e-01 100.0% 49.1%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 35.0 2.78e-01 75.0% 33.8%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 37.0 3.71e-01 87.5% 70.8%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.54e-01 81.9% 52.7%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 47.0 3.07e-01 100.0% 24.2%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 49.0 4.07e-01 100.0% 87.9%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 43.0 3.85e-01 87.5% 61.8%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 50.0 3.13e-01 100.0% 24.6%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.53 42.0 3.20e-01 84.7% 45.8%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 43.0 3.64e-01 88.9% 81.7%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.73e-01 100.0% 92.0%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.51 37.0 3.50e-01 81.9% 72.3%
1gmeA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.14e-01 86.1% 45.3%
4rnyA03 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.50 43.0 3.52e-01 93.1% 82.0%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3584391 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.80 51.0 4.64e-01 72.2% 49.5%
4953417 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.74 52.0 5.31e-01 72.2% 77.1%
5053933 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 52.0 5.51e-01 100.0% 86.2%
1007197 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 48.0 4.72e-01 100.0% 71.1%
3598422 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.66 52.0 4.58e-01 83.3% 86.0%
3608254 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 44.0 4.25e-01 70.8% 72.5%
3586856 2004.1.1.514 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B 0.63 51.0 3.15e-01 86.1% 29.5%
4959054 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 45.0 4.23e-01 77.8% 84.7%
4021809 12.1.1.35 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C 0.60 42.0 3.94e-01 73.6% 92.2%
2717407 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 3.92e-01 70.8% 72.3%
3395585 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.60 47.0 4.90e-01 100.0% 93.8%
4948943 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 54.0 5.25e-01 98.6% 93.6%
3770717 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.59 54.0 3.44e-01 100.0% 40.9%
3851509 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.59 54.0 3.19e-01 100.0% 33.6%
4967968 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 41.0 3.60e-01 75.0% 94.3%
3990949 2498.1.1.6 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 0.57 38.0 2.55e-01 70.8% 17.9%
4931002 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 41.0 3.89e-01 75.0% 98.8%
5055486 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 43.0 4.04e-01 86.1% 68.2%
4419937 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.56 47.0 4.42e-01 90.3% 80.0%
3542721 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 50.0 4.23e-01 100.0% 87.5%
5034543 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.53e-01 70.8% 64.4%
4985279 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.55 40.0 3.92e-01 76.4% 87.5%
3251681 11.1.1.802 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.54 38.0 3.56e-01 75.0% 78.9%
1699918 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 43.0 3.54e-01 87.5% 52.3%
3918582 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.07e-01 77.8% 54.0%
5027867 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.52 41.0 3.10e-01 90.3% 88.2%
3981427 11.1.1.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C 0.51 37.0 3.56e-01 79.2% 83.5%
3368618 5.1.3.151 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_2, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.51 41.0 2.63e-01 90.3% 33.0%
4008618 11.1.1.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C 0.51 36.0 3.49e-01 77.8% 80.0%
4068494 11.1.1.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C 0.51 36.0 3.52e-01 79.2% 81.2%
4931886 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.51 45.0 3.52e-01 100.0% 63.9%
3957605 243.1.1.35 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › ORF_12_N 0.50 44.0 4.05e-01 100.0% 93.7%