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IMGVR_UViG_3300045988_183228-3300045988-Ga0495776_144978_1791_2087

Arc-Vir

IMGVR_UViG_3300045988_183228-3300045988-Ga0495776_144978_1791_2087

Identity

Kingdom:
archaea

Quality

84.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-72
PDB
Domain cluster: rep: SRR1747052_scaffold_7_prodigal-single.1__X__X__00197__D78-136
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.65 54.0 4.07e-01 91.7% 88.6%
4kqdB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 45.0 3.85e-01 75.0% 45.7%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 49.0 3.72e-01 86.1% 62.6%
1ms9A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.62 43.0 2.79e-01 73.6% 33.1%
3zs7A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 51.0 3.51e-01 98.6% 74.0%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 38.0 3.46e-01 83.3% 48.4%
3u2sC00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 35.0 3.28e-01 98.6% 43.3%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 45.0 3.39e-01 81.9% 86.9%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.57 41.0 3.29e-01 77.8% 40.1%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 36.0 3.39e-01 86.1% 50.5%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 39.0 3.26e-01 73.6% 48.5%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.55 35.0 3.41e-01 87.5% 57.0%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.55 37.0 2.93e-01 70.8% 37.4%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 37.0 3.10e-01 70.8% 84.2%
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 37.0 3.15e-01 72.2% 42.3%
1f20A02 1.20.990.10 Mainly Alpha › Up-down Bundle › NADPH-cytochrome p450 Reductase; Chain A, domain 3 › NADPH-cytochrome p450 Reductase; Chain A, domain 3 0.54 43.0 3.32e-01 86.1% 48.4%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.54 38.0 2.86e-01 75.0% 31.3%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 37.0 3.38e-01 75.0% 57.0%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.30e-01 77.8% 85.4%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 41.0 3.38e-01 90.3% 54.0%
4jmdA00 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.52 40.0 2.84e-01 86.1% 62.6%
2d8bA01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 41.0 3.48e-01 93.1% 95.0%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 39.0 2.73e-01 83.3% 72.1%
4e0aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 36.0 2.89e-01 83.3% 34.6%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 40.0 3.46e-01 91.7% 98.5%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 38.0 3.04e-01 81.9% 79.1%
3r0qA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.51 40.0 3.04e-01 91.7% 95.7%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.51 32.0 3.67e-01 88.9% 97.9%
5dstA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.50 41.0 3.22e-01 95.8% 73.4%
4r6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.34e-01 87.5% 60.2%
3n7zA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 33.0 2.83e-01 83.3% 37.1%
6dnzA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.50 42.0 3.26e-01 97.2% 73.6%
4iykA02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 34.0 3.05e-01 73.6% 83.1%
1fmbA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.50 30.0 2.72e-01 84.7% 41.3%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3658408 4325.1.1.13 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.66 43.0 4.26e-01 88.9% 62.7%
3198214 274.1.1.48 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7924 0.66 46.0 4.69e-01 73.6% 100.0%
3511606 3246.1.1.0 ↗ few secondary structure elements › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins › Disulfide-rich domain in A Disintegrin And Metalloprotease (ADAM) domain-containing proteins 0.64 44.0 4.02e-01 77.8% 54.3%
3697816 2008.1.1.99 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 0.63 48.0 3.60e-01 81.9% 46.2%
3683658 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.63 40.0 2.58e-01 87.5% 13.1%
3663874 2484.1.1.157 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 0.63 40.0 2.52e-01 87.5% 11.6%
3189690 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.62 43.0 2.73e-01 73.6% 30.5%
3736768 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 52.0 3.51e-01 100.0% 38.0%
5079500 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.60 43.0 3.23e-01 76.4% 32.2%
3479176 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.60 35.0 3.46e-01 87.5% 51.2%
3924277 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.60 43.0 2.40e-01 75.0% 10.1%
3639738 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.60 38.0 3.94e-01 86.1% 68.7%
3603591 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 42.0 2.75e-01 76.4% 25.3%
5018473 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 47.0 3.23e-01 90.3% 62.5%
3868894 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 44.0 2.84e-01 81.9% 34.5%
3487711 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 44.0 2.89e-01 80.6% 25.8%
3787176 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.58 44.0 3.56e-01 84.7% 43.8%
3400148 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 42.0 2.78e-01 76.4% 28.1%
3230015 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 41.0 2.49e-01 73.6% 23.9%
3848511 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 44.0 2.48e-01 83.3% 8.3%
3494009 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.57 34.0 3.22e-01 87.5% 45.6%
3886322 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 43.0 2.78e-01 83.3% 33.8%
164228 2.1.1.54 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3217 0.57 36.0 3.24e-01 86.1% 44.2%
3722420 2008.1.1.143 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 0.56 40.0 3.10e-01 75.0% 47.5%
3937910 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 34.0 3.29e-01 87.5% 50.6%
3391461 3308.2.1.1 ↗ beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › 4_1_CTD 0.56 33.0 3.26e-01 87.5% 53.3%
3612632 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.56 42.0 2.56e-01 83.3% 22.9%
3777007 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 42.0 2.81e-01 83.3% 25.2%
3803793 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.55 47.0 3.15e-01 95.8% 78.3%
3842596 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 40.0 2.57e-01 81.9% 25.3%
3613168 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.53 40.0 2.53e-01 81.9% 23.3%
3851439 5.1.4.612 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Med16_N, Med16_bridge, Med16_C 0.53 44.0 2.63e-01 95.8% 17.5%
4859328 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.53 36.0 2.96e-01 72.2% 43.6%
4389579 5.1.4.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.53 44.0 2.72e-01 95.8% 22.3%
3554206 5.1.4.427 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Med16_N 0.53 44.0 2.71e-01 95.8% 21.4%
4305743 5.1.4.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.52 44.0 2.77e-01 100.0% 27.3%
3219928 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.52 39.0 2.73e-01 81.9% 45.9%
2754696 5.1.5.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 43.0 2.91e-01 95.8% 34.1%
3413293 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 43.0 2.80e-01 94.4% 31.4%
3463102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 36.0 2.84e-01 75.0% 33.5%
4156336 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.51 40.0 3.46e-01 93.1% 97.7%
3592605 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.51 38.0 2.98e-01 83.3% 88.6%
3706357 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.50 40.0 2.95e-01 91.7% 77.8%
3869953 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 41.0 2.61e-01 91.7% 82.3%
3770073 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.50 41.0 2.61e-01 91.7% 82.8%
3687369 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.50 40.0 3.58e-01 86.1% 66.0%