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IMGVR_UViG_3300045988_183407-3300045988-Ga0495776_107850_908_1144
Arc-VirIMGVR_UViG_3300045988_183407-3300045988-Ga0495776_107850_908_1144
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-61
Domain cluster:
rep: IMGVR_UViG_3300029336_000194-3300029336-Ga0243752_10451910__D5-55
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04434.23 best | SWIM | 25.4 | 1.10e-05 | 65.5% | 94.7% |
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g7nA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.70 | 62.0 | 5.10e-01 | 100.0% | 55.7% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.61 | 43.0 | 3.24e-01 | 74.5% | 68.1% |
| 3pquA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.61 | 52.0 | 3.74e-01 | 100.0% | 76.8% |
| 4okeA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.61 | 51.0 | 3.80e-01 | 100.0% | 96.2% |
| 2f4wB00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.60 | 48.0 | 3.65e-01 | 94.5% | 84.2% |
| 1zswA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 51.0 | 3.62e-01 | 100.0% | 59.6% |
| 2qzuA02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.59 | 40.0 | 3.47e-01 | 70.9% | 62.4% |
| 3a58A01 | 2.30.29.90 | Mainly Beta › Roll › PH-domain like › | 0.58 | 45.0 | 3.21e-01 | 85.5% | 83.3% |
| 1mtpA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.58 | 46.0 | 3.94e-01 | 96.4% | 53.8% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.58 | 46.0 | 3.72e-01 | 92.7% | 68.9% |
| 2h1eA02 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 37.0 | 3.79e-01 | 94.5% | 67.3% |
| 1a7tA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 45.0 | 3.08e-01 | 92.7% | 24.2% |
| 1iyxA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 47.0 | 3.75e-01 | 100.0% | 96.8% |
| 2a6hC03 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.56 | 46.0 | 3.34e-01 | 100.0% | 88.9% |
| 1wuoA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 46.0 | 3.10e-01 | 92.7% | 24.2% |
| 3n4eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 47.0 | 3.90e-01 | 100.0% | 94.2% |
| 1fu1A01 | 2.170.210.10 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal | 0.55 | 46.0 | 3.69e-01 | 98.2% | 64.4% |
| 4lduA02 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.55 | 43.0 | 3.53e-01 | 89.1% | 49.1% |
| 2dk7A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.55 | 46.0 | 4.30e-01 | 100.0% | 82.2% |
| 5umsA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 45.0 | 3.64e-01 | 90.9% | 52.0% |
| 4r9iA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.54 | 42.0 | 3.59e-01 | 90.9% | 87.0% |
| 3s5wA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 44.0 | 2.62e-01 | 92.7% | 99.0% |
| 5h1kA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 44.0 | 2.78e-01 | 100.0% | 34.5% |
| 1a1aB00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.53 | 39.0 | 3.27e-01 | 81.8% | 47.1% |
| 4pj2A00 | 2.40.128.460 | Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme | 0.53 | 38.0 | 3.09e-01 | 81.8% | 50.4% |
| 3citA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 43.0 | 3.14e-01 | 90.9% | 82.6% |
| 1vhzA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.52 | 44.0 | 3.15e-01 | 100.0% | 42.1% |
| 1ykdB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 40.0 | 2.89e-01 | 90.9% | 29.9% |
| 3ayjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 38.0 | 2.39e-01 | 87.3% | 87.9% |
| 2kd2A01 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 41.0 | 3.73e-01 | 98.2% | 83.3% |
| 4hu4A00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.51 | 38.0 | 2.53e-01 | 100.0% | 18.6% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.51 | 39.0 | 2.95e-01 | 83.6% | 78.3% |
| 1faoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 40.0 | 3.31e-01 | 87.3% | 95.0% |
| 3hxlA02 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.52e-01 | 90.9% | 62.2% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3436834 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.81 | 69.0 | 4.26e-01 | 92.7% | 17.5% |
| 3379174 | 109.4.1.1845 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SWIM | 0.79 | 71.0 | 5.09e-01 | 100.0% | 36.0% |
| 5075725 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 40.0 | 2.98e-01 | 100.0% | 25.5% |
| 3536576 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.62 | 49.0 | 4.29e-01 | 89.1% | 94.1% |
| 3177260 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.61 | 52.0 | 3.49e-01 | 100.0% | 29.4% |
| 5084015 | 6050.1.1.0 ↗ | a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone | 0.61 | 49.0 | 4.39e-01 | 92.7% | 100.0% |
| 3880624 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.59 | 45.0 | 4.02e-01 | 83.6% | 72.5% |
| 3458037 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.59 | 43.0 | 3.08e-01 | 81.8% | 25.1% |
| 4971094 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.59 | 40.0 | 3.05e-01 | 72.7% | 99.3% |
| 3879684 | 223.2.1.46 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, FNIP_M | 0.57 | 42.0 | 3.07e-01 | 81.8% | 27.9% |
| 3997779 | 12.3.1.26 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_63N | 0.57 | 38.0 | 2.57e-01 | 70.9% | 46.8% |
| 3853098 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.57 | 45.0 | 3.74e-01 | 89.1% | 55.0% |
| 4595965 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.56 | 48.0 | 3.71e-01 | 100.0% | 92.3% |
| 3963647 | 2.8.1.0 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C | 0.55 | 38.0 | 3.47e-01 | 72.7% | 96.0% |
| 3465790 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.55 | 44.0 | 3.00e-01 | 90.9% | 79.1% |
| 3652106 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.55 | 45.0 | 3.73e-01 | 94.5% | 51.9% |
| 3788007 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 44.0 | 2.62e-01 | 92.7% | 17.1% |
| 4280539 | 109.21.1.8 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 | 0.55 | 45.0 | 2.56e-01 | 100.0% | 14.9% |
| 1140096 | 5.1.3.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › YqgU | 0.55 | 44.0 | 2.80e-01 | 94.5% | 42.0% |
| 4399358 | 218.1.1.2 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N | 0.55 | 47.0 | 3.65e-01 | 100.0% | 88.9% |
| 3274237 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 47.0 | 2.93e-01 | 100.0% | 17.0% |
| 4353121 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.54 | 45.0 | 3.79e-01 | 96.4% | 98.0% |
| 4978135 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 45.0 | 3.37e-01 | 96.4% | 46.2% |
| 3624687 | 64.1.1.9 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 | 0.54 | 43.0 | 4.45e-01 | 92.7% | 100.0% |
| 3992152 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.54 | 45.0 | 3.37e-01 | 98.2% | 79.3% |
| 3924545 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.52 | 40.0 | 3.21e-01 | 85.5% | 39.2% |
| 3276895 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 45.0 | 2.71e-01 | 100.0% | 31.1% |
| 5080919 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 44.0 | 3.67e-01 | 98.2% | 81.9% |
| 5076798 | 321.1.1.7 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 | 0.51 | 40.0 | 2.51e-01 | 100.0% | 23.2% |
| 3912274 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.51 | 39.0 | 3.59e-01 | 81.8% | 82.9% |
| 4373795 | 220.1.1.126 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 | 0.51 | 43.0 | 3.47e-01 | 100.0% | 90.7% |
| 3934453 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.50 | 45.0 | 3.48e-01 | 98.2% | 61.7% |
| 3498520 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 43.0 | 2.70e-01 | 100.0% | 26.0% |
| 4586498 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.50 | 41.0 | 3.29e-01 | 100.0% | 93.1% |
| 3836701 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.50 | 40.0 | 2.94e-01 | 87.3% | 75.7% |