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IMGVR_UViG_3300045988_183538-3300045988-Ga0495776_084203_11675_12139

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300045988_183538-3300045988-Ga0495776_084203_11675_12139 ↗
Kingdom:: archaea

Quality

87.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-97

PDB

Domain cluster: representative

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wa0A01	1.10.10.1200	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif	0.65	37.0	3.61e-01	70.0%	49.5%
2yweA03	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.59	42.0	4.37e-01	83.3%	81.7%
2mzwA01	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.59	41.0	4.41e-01	83.3%	86.8%
1kyzA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	39.0	3.74e-01	76.7%	60.2%
2jisA01	3.90.1150.170	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 ›	0.55	48.0	3.60e-01	100.0%	41.8%
1bd3A00	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.54	37.0	2.79e-01	70.0%	70.5%
2dt9A02	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.54	39.0	4.13e-01	81.1%	87.3%
4em2A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	34.0	2.90e-01	75.6%	37.3%
1ub9A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	35.0	3.44e-01	76.7%	60.0%
3s1tA02	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.52	38.0	3.96e-01	81.1%	85.0%
1ug8A00	3.30.1370.50	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain	0.52	30.0	3.12e-01	71.1%	56.3%
2qbyB03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	37.0	3.70e-01	74.4%	76.9%
1fpqA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	40.0	3.65e-01	86.7%	60.5%
1j4wA01	3.30.1370.10	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1	0.51	37.0	3.98e-01	83.3%	97.3%
2dqlA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	37.0	3.52e-01	80.0%	67.8%
2dchX01	3.10.28.10	Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases	0.50	33.0	3.36e-01	90.0%	65.6%
1t0tV02	3.30.70.1030	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1	0.50	39.0	3.71e-01	86.7%	78.4%

ECOD (30)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3968916	101.1.9.63 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N	0.78	62.0	5.91e-01	100.0%	73.3%
3505855	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.74	61.0	6.40e-01	97.8%	100.0%
3984393	101.1.9.88 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha	0.68	57.0	5.33e-01	98.9%	74.5%
3986225	101.1.9.32 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT	0.68	51.0	3.95e-01	81.1%	36.6%
4998593	101.1.9.0 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain	0.64	54.0	5.02e-01	100.0%	73.9%
3947416	101.1.9.88 ↗	alpha arrays › HTH › HTH › Putative DNA-binding domain › Phage_pRha	0.63	54.0	5.08e-01	98.9%	78.2%
3228509	101.1.4.12 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC	0.60	40.0	3.51e-01	71.1%	45.2%
3230114	101.1.2.167 ↗	alpha arrays › HTH › HTH › winged helix domain › XRN1_D2_D3	0.60	44.0	3.78e-01	80.0%	68.4%
5011620	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.58	37.0	3.79e-01	75.6%	64.4%
4133554	304.24.1.21 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III	0.58	41.0	3.25e-01	83.3%	35.3%
5077356	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	42.0	3.77e-01	76.7%	60.8%
3330019	101.1.2.88 ↗	alpha arrays › HTH › HTH › winged helix domain › Dimerisation	0.57	38.0	3.59e-01	85.6%	54.8%
3381288	304.24.1.0 ↗	a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like	0.57	40.0	4.15e-01	83.3%	80.0%
3215882	304.8.1.72 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › SCVP	0.54	41.0	4.14e-01	81.1%	83.3%
4959599	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.54	39.0	3.64e-01	76.7%	61.4%
4968695	3016.1.1.0 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases	0.53	46.0	3.90e-01	100.0%	60.0%
3987138	253.1.1.1 ↗	a+b complex topology › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Arginosuc_syn_C	0.53	37.0	2.69e-01	72.2%	44.6%
5018509	2008.1.1.15 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N	0.53	39.0	2.93e-01	81.1%	92.2%
3969012	101.1.2.485 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF2513	0.52	34.0	3.50e-01	78.9%	67.8%
3242949	633.23.1.17 ↗	alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA	0.52	39.0	2.89e-01	82.2%	65.7%
5060792	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.52	39.0	3.56e-01	94.4%	58.9%
3997528	101.1.2.148 ↗	alpha arrays › HTH › HTH › winged helix domain › ORC5_C	0.52	39.0	3.43e-01	82.2%	100.0%
4934658	304.126.1.0 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C	0.51	35.0	3.80e-01	88.9%	91.4%
5047402	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.51	37.0	3.53e-01	77.8%	64.5%
3782190	101.1.2.65 ↗	alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8	0.51	37.0	3.47e-01	77.8%	74.6%
3613596	2004.1.1.427 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RHSP, RHS_N	0.51	38.0	2.58e-01	81.1%	45.8%
5054678	304.126.1.0 ↗	a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C	0.50	35.0	3.81e-01	84.4%	89.3%
5056655	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.50	34.0	3.57e-01	77.8%	78.8%
3726378	304.4.1.4 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM	0.50	38.0	3.70e-01	83.3%	73.3%
4250601	186.1.1.0 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N	0.50	35.0	2.91e-01	74.4%	68.2%

D2 high residues 106-153

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4jbeB01	3.40.605.10	Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1	0.57	46.0	2.91e-01	93.8%	60.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4953416	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.73	49.0	4.73e-01	75.0%	61.8%