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IMGVR_UViG_3300045988_183709-3300045988-Ga0495776_051877_22482_23438

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300045988_183709-3300045988-Ga0495776_051877_22482_23438 ↗
Kingdom:: archaea

Quality

65.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-91

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4lw8A02	3.90.25.10	Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1	0.58	30.0	3.08e-01	94.5%	50.6%
3ecoB00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	32.0	2.84e-01	82.4%	40.3%
3pnnA00	3.90.550.10	Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	0.53	41.0	2.83e-01	81.3%	61.1%
4nimA00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.52	39.0	3.00e-01	81.3%	91.7%
5zyrA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	29.0	2.45e-01	83.5%	31.8%
2kq9A00	1.20.120.910	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain	0.51	44.0	4.14e-01	94.5%	83.9%
4p98A01	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.51	37.0	3.25e-01	78.0%	92.4%
2ejqB00	3.30.2010.20	Alpha Beta › 2-Layer Sandwich › Zincin-like ›	0.50	35.0	3.28e-01	72.5%	90.4%
2esnA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	28.0	2.91e-01	83.5%	52.8%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3284253	101.1.2.1 ↗	alpha arrays › HTH › HTH › winged helix domain › HTH_1	0.60	31.0	3.18e-01	83.5%	50.0%
3496333	7512.1.1.0 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase	0.56	35.0	2.29e-01	100.0%	16.1%
4982701	101.1.2.109 ↗	alpha arrays › HTH › HTH › winged helix domain › Rio2_N	0.56	34.0	3.58e-01	86.8%	65.9%
3198833	3009.1.1.1 ↗	alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › DSBA	0.54	46.0	3.56e-01	97.8%	84.5%

D2 high residues 110-226

PDB

D3 high residues 248-311

PDB

Domain cluster: rep: IMGVR_UViG_3300029822_000964-3300029822-Ga0134854_10030613__D692-751

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2kxqA01	2.20.70.10	Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; ›	0.71	33.0	4.36e-01	98.4%	90.0%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3587270	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.58	43.0	3.65e-01	81.2%	62.6%
3774968	11.1.1.97 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set	0.52	39.0	3.36e-01	85.9%	73.0%
3519898	5.1.4.262 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_CAF1B_HIR1	0.50	35.0	2.38e-01	100.0%	17.9%