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IMGVR_UViG_3300045988_183714-3300045988-Ga0495776_153377_30547_30621

Arc-Vir

IMGVR_UViG_3300045988_183714-3300045988-Ga0495776_153377_30547_30621

Quality

90.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-25
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ttqA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.77 60.0 3.49e-01 100.0% 10.1%
1kf6B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.75 54.0 3.79e-01 100.0% 25.0%
3ksrA01 6.20.370.100 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.72 47.0 4.79e-01 100.0% 92.0%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.71 52.0 3.08e-01 100.0% 10.5%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 45.0 3.46e-01 100.0% 26.9%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 45.0 4.53e-01 100.0% 64.1%
4rgyA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.67 46.0 2.79e-01 100.0% 10.5%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 45.0 2.96e-01 100.0% 15.3%
7bi2A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 45.0 3.24e-01 100.0% 22.4%
4f0aB02 3.30.2460.20 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain 0.65 42.0 3.57e-01 100.0% 54.4%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 46.0 2.81e-01 100.0% 10.3%
4q52A00 2.60.40.3910 Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein 0.64 41.0 2.73e-01 100.0% 20.6%
6ddtA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.64 40.0 2.35e-01 96.0% 6.6%
4mx8C01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.64 40.0 2.62e-01 100.0% 15.3%
3dorA03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.63 42.0 2.55e-01 100.0% 9.4%
3lmlA01 3.10.450.690 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 43.0 3.06e-01 100.0% 57.0%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 39.0 3.02e-01 100.0% 25.3%
4cbgD02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 43.0 2.84e-01 100.0% 15.5%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 47.0 3.21e-01 100.0% 36.9%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 41.0 3.05e-01 100.0% 22.9%
2kqfA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 39.0 2.97e-01 100.0% 97.9%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 39.0 3.00e-01 100.0% 26.7%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 41.0 2.84e-01 100.0% 24.8%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.59 41.0 2.55e-01 100.0% 11.5%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 37.0 3.43e-01 96.0% 42.1%
2wzpR02 3.55.50.50 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Phage tail base-plate attachment protein, domain D4 0.58 39.0 2.87e-01 100.0% 23.2%
1dynA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 36.0 2.67e-01 96.0% 22.1%
1apyB00 3.60.20.30 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase 0.55 38.0 2.65e-01 100.0% 19.9%
5ccbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 36.0 2.33e-01 100.0% 14.8%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 36.0 2.53e-01 96.0% 20.5%
2x7bA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 37.0 2.49e-01 100.0% 17.3%
3clqA04 3.90.1700.10 Alpha Beta › Alpha-Beta Complex › v583 fold › v583 domain like 0.53 36.0 2.42e-01 100.0% 19.6%
2sliA03 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.51 37.0 2.75e-01 88.0% 20.0%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.51 35.0 2.88e-01 100.0% 29.9%
4qkyA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 31.0 2.54e-01 100.0% 23.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3712216 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.86 69.0 4.79e-01 100.0% 27.8%
4340758 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 61.0 4.76e-01 100.0% 35.7%
3648114 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.83 65.0 4.61e-01 100.0% 29.4%
4023152 5.1.5.115 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_WDR3_2nd 0.82 62.0 3.47e-01 100.0% 7.1%
3654856 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.81 62.0 4.25e-01 100.0% 23.8%
4025162 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.79 61.0 4.25e-01 100.0% 26.3%
3728856 171.1.1.9 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3 0.79 56.0 3.35e-01 100.0% 11.1%
5050142 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.77 55.0 3.58e-01 100.0% 59.3%
3992019 1.1.1.14 beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 0.77 55.0 3.67e-01 100.0% 19.2%
3476505 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.76 57.0 3.74e-01 100.0% 22.3%
4101594 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.76 51.0 3.57e-01 100.0% 20.8%
4197190 812.1.1.1 a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE 0.75 53.0 4.45e-01 100.0% 41.7%
3730893 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.75 57.0 4.03e-01 100.0% 26.3%
3550768 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.75 56.0 2.95e-01 96.0% 2.6%
3585474 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 52.0 3.73e-01 100.0% 23.8%
3785861 5.1.2.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BMT 0.74 57.0 3.08e-01 100.0% 4.8%
3309384 9.13.1.1 beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Dirigent 0.73 49.0 3.44e-01 100.0% 21.0%
3938203 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.72 53.0 3.04e-01 100.0% 8.1%
3262616 327.18.1.0 a+b two layers › Alpha-lytic protease prodomain-like › 40S ribosomal protein S7-A › 40S ribosomal protein S7-A 0.70 54.0 4.05e-01 100.0% 33.3%
5075421 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.70 48.0 2.87e-01 100.0% 9.6%
3539534 354.1.1.8 few secondary structure elements › Sea anemone toxin k-like › Sea anemone toxin k-related › Sea anemone toxin k-related › MAGP 0.70 49.0 5.00e-01 100.0% 90.0%
3238189 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.69 46.0 3.08e-01 96.0% 17.1%
3582577 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 47.0 3.24e-01 100.0% 19.2%
4972327 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.69 47.0 3.50e-01 100.0% 26.3%
3924081 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.69 47.0 3.16e-01 100.0% 17.1%
3496677 3315.1.1.1 a+b complex topology › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Glyco_transf_41 0.68 50.0 3.41e-01 100.0% 30.4%
1153578 75.1.1.1 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase 0.68 50.0 3.98e-01 100.0% 40.0%
4187457 4967.1.1.6 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.67 47.0 3.22e-01 100.0% 20.8%
3622254 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 43.0 3.01e-01 100.0% 21.6%
4544858 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.66 46.0 2.55e-01 100.0% 6.0%
3959362 101.1.1.531 alpha arrays › HTH › HTH › Three-helical HTH › WS_DGAT_cat 0.66 46.0 3.04e-01 100.0% 16.7%
5007619 3010.1.1.2 a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.65 45.0 3.20e-01 100.0% 24.5%
3195503 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 40.0 2.28e-01 100.0% 5.2%
3493726 59.1.1.7 beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Tau95_N 0.63 38.0 2.67e-01 100.0% 17.0%
4351239 4967.1.1.6 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 0.63 41.0 2.91e-01 100.0% 20.8%
3927169 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 43.0 3.07e-01 100.0% 21.7%
4979109 2006.1.4.56 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF5615 0.61 41.0 2.92e-01 100.0% 19.3%
3734626 171.1.1.1 alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.61 43.0 2.65e-01 100.0% 11.4%
4126255 4967.1.1.25 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N 0.61 43.0 2.55e-01 92.0% 13.5%
3741228 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.60 41.0 2.30e-01 100.0% 42.6%
3954749 304.51.1.2 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs 0.60 38.0 2.47e-01 100.0% 12.2%
5036805 3010.1.1.2 a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.60 39.0 2.99e-01 100.0% 24.2%
3287591 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.60 39.0 2.13e-01 100.0% 4.1%
3612987 206.1.3.12 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.59 45.0 2.93e-01 96.0% 15.0%
3943681 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.59 41.0 2.77e-01 100.0% 56.0%
4220790 4186.1.1.1 beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.59 44.0 2.99e-01 100.0% 75.7%
3997815 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 38.0 2.18e-01 100.0% 24.8%
5019603 3010.1.1.0 a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.57 37.0 2.80e-01 100.0% 20.0%
3272363 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.57 37.0 2.93e-01 100.0% 26.3%
3788129 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.56 41.0 3.31e-01 100.0% 36.0%
4938548 3010.1.1.2 a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C 0.56 45.0 3.09e-01 100.0% 38.3%
3595936 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 35.0 2.08e-01 96.0% 92.4%
3940319 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 35.0 2.06e-01 100.0% 6.7%
4968312 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.54 34.0 2.20e-01 100.0% 11.7%
4245972 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.54 39.0 2.44e-01 84.0% 10.2%
5014980 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 40.0 2.85e-01 100.0% 22.6%
5052927 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 2.83e-01 100.0% 20.0%
4022336 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 37.0 2.11e-01 100.0% 5.0%
3302391 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.51 38.0 2.55e-01 84.0% 29.3%