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IMGVR_UViG_3300046049_000010-3300046049-Ga0496842_00094_28344_28928
Arc-VirIMGVR_UViG_3300046049_000010-3300046049-Ga0496842_00094_28344_28928
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-53
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3llkA01 | 1.20.120.1960 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain | 0.74 | 61.0 | 4.80e-01 | 91.7% | 78.6% |
| 2g8lA02 | 1.10.285.20 | Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 | 0.71 | 57.0 | 5.25e-01 | 93.8% | 73.8% |
| 1ac1A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.68 | 56.0 | 3.87e-01 | 100.0% | 28.2% |
| 1iv8A04 | 1.10.10.470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Maltooligosyl trehalose synthase; domain 4 | 0.68 | 50.0 | 4.04e-01 | 81.2% | 58.8% |
| 2pusA05 | 1.10.1740.80 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.62 | 51.0 | 4.49e-01 | 100.0% | 68.8% |
| 3am6A00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.62 | 42.0 | 2.80e-01 | 72.9% | 16.5% |
| 4jndA02 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.59 | 46.0 | 2.99e-01 | 95.8% | 25.2% |
| 2lxeA01 | 1.10.8.850 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Histone-lysine N methyltransferase , C-terminal domain-like | 0.59 | 46.0 | 4.27e-01 | 97.9% | 73.9% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.59 | 46.0 | 3.99e-01 | 97.9% | 78.7% |
| 2kruA01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.58 | 44.0 | 4.37e-01 | 95.8% | 92.3% |
| 3sdgA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 39.0 | 4.10e-01 | 75.0% | 88.1% |
| 2hq4A00 | 3.40.1600.10 | Alpha Beta › 3-Layer(aba) Sandwich › PH1570-like fold › PH1570-like | 0.57 | 48.0 | 3.36e-01 | 95.8% | 98.7% |
| 1puzA00 | 1.10.150.250 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Flavinator of succinate dehydrogenase | 0.57 | 48.0 | 4.16e-01 | 100.0% | 72.0% |
| 3h0dB02 | 1.10.1200.150 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain | 0.57 | 46.0 | 4.03e-01 | 97.9% | 69.1% |
| 3l6gA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 46.0 | 3.40e-01 | 100.0% | 90.7% |
| 4qdnA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.56 | 43.0 | 3.49e-01 | 97.9% | 67.8% |
| 1tm9A00 | 1.10.3960.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein MG354 fold › MG354-like | 0.56 | 39.0 | 2.90e-01 | 75.0% | 55.5% |
| 3ihmA03 | 6.10.250.650 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 43.0 | 4.37e-01 | 97.9% | 100.0% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 39.0 | 3.18e-01 | 77.1% | 39.4% |
| 3lssA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.53 | 40.0 | 3.12e-01 | 85.4% | 98.2% |
| 1hwyA01 | 1.10.287.140 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 36.0 | 3.63e-01 | 77.1% | 88.2% |
| 2lc3A00 | 1.10.720.80 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.52 | 44.0 | 3.67e-01 | 100.0% | 63.6% |
| 3k1rA01 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.52 | 43.0 | 3.72e-01 | 100.0% | 60.5% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.52 | 40.0 | 3.63e-01 | 100.0% | 69.6% |
| 1dp3A00 | 1.10.10.450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TraM protein, DNA-binding | 0.51 | 34.0 | 3.33e-01 | 70.8% | 63.6% |
| 6s10A01 | 1.10.1710.10 | Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain | 0.51 | 34.0 | 2.76e-01 | 70.8% | 55.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4378615 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.68 | 47.0 | 4.57e-01 | 75.0% | 72.7% |
| 3626343 | 3396.1.1.2 ↗ | extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › DUF1757 | 0.67 | 48.0 | 3.15e-01 | 77.1% | 49.3% |
| 4940968 | 2.14.1.1 ↗ | beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC | 0.61 | 51.0 | 3.61e-01 | 100.0% | 89.7% |
| 3996657 | 4979.2.1.1 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD | 0.60 | 49.0 | 4.93e-01 | 97.9% | 94.0% |
| 4003310 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.60 | 48.0 | 4.50e-01 | 97.9% | 89.2% |
| 3815976 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.60 | 49.0 | 4.71e-01 | 100.0% | 85.0% |
| None | — | 0.60 | 47.0 | 3.09e-01 | 93.8% | 84.4% | |
| 4223595 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.60 | 46.0 | 4.52e-01 | 93.8% | 89.1% |
| 5053286 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.60 | 44.0 | 2.72e-01 | 83.3% | 31.8% |
| 3927241 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 43.0 | 4.28e-01 | 81.2% | 82.0% |
| 3213449 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.58 | 46.0 | 4.18e-01 | 93.8% | 67.1% |
| 3927239 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 43.0 | 4.16e-01 | 85.4% | 72.7% |
| 4945681 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.57 | 44.0 | 4.34e-01 | 100.0% | 94.5% |
| 4993069 | 632.12.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 | 0.55 | 45.0 | 4.18e-01 | 95.8% | 81.0% |
D2
high
residues 84-177
Domain cluster:
rep: IMGVR_UViG_2502082094_000002-2502082094-2502095591__D21-106