←Back to structures

IMGVR_UViG_3300046050_000037-3300046050-Ga0496843_02818_2734_2997

Arc-Vir

IMGVR_UViG_3300046050_000037-3300046050-Ga0496843_02818_2734_2997

Identity

Kingdom:
archaea

Quality

68.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-86
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 46.0 3.08e-01 100.0% 22.1%
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 34.0 2.62e-01 84.2% 22.5%
1e0yA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 48.0 3.93e-01 96.5% 63.1%
1r5pB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 37.0 3.20e-01 73.7% 40.9%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.54 44.0 3.00e-01 94.7% 58.1%
4wu3A02 3.30.70.1690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 40.0 3.58e-01 82.5% 77.6%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.01e-01 100.0% 79.1%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 43.0 4.06e-01 93.0% 91.7%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 45.0 3.73e-01 100.0% 91.8%
3f41A01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 40.0 2.56e-01 82.5% 24.7%
5ccbA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 43.0 4.05e-01 93.0% 88.9%
3uv0B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 40.0 3.37e-01 84.2% 98.0%
3vzbB02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 41.0 3.06e-01 100.0% 84.7%
3p42A03 3.10.560.10 Alpha Beta › Roll › Outer membrane lipoprotein wza fold like › Outer membrane lipoprotein wza domain like 0.52 44.0 4.14e-01 100.0% 95.9%
1ihnA00 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.52 41.0 3.53e-01 100.0% 96.5%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 43.0 3.11e-01 91.2% 93.0%
5eqjB01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 41.0 3.92e-01 93.0% 88.7%
2cyjA00 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.50 39.0 3.38e-01 100.0% 98.3%
1eerC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.51e-01 93.0% 79.4%
2dwcB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.50 41.0 4.10e-01 98.2% 88.1%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3650485 355.1.1.0 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like 0.74 42.0 4.82e-01 84.2% 80.0%
4026211 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.65 45.0 4.80e-01 73.7% 100.0%
3385871 872.8.1.0 ↗ a+b two layers › Dodecin subunit-like › Probable RNA-binding protein N-terminal domain › Probable RNA-binding protein N-terminal domain 0.64 42.0 2.94e-01 84.2% 20.5%
3323366 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 45.0 4.27e-01 86.0% 96.0%
3643957 2004.1.2.2 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP 0.59 43.0 2.74e-01 78.9% 53.8%
3935683 206.1.3.57 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › FAM91_C 0.54 45.0 3.00e-01 100.0% 22.0%
3576112 206.1.3.57 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › FAM91_C 0.54 46.0 3.09e-01 100.0% 24.3%
3315163 3125.1.1.1 ↗ alpha arrays › Asl3597 › Asl3597 › Asl3597 › CRR7 0.54 41.0 3.79e-01 84.2% 97.3%
3410454 206.1.3.57 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › FAM91_C 0.54 45.0 3.00e-01 100.0% 23.4%
1238942 73.1.1.10 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MU2_FHA 0.52 40.0 3.37e-01 84.2% 98.0%
3263574 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 46.0 3.96e-01 100.0% 77.8%
None — 0.52 42.0 2.48e-01 98.2% 25.8%
5022272 7538.1.1.1 ↗ a/b three-layered sandwiches › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › DUF498 0.51 40.0 3.40e-01 100.0% 98.4%
4132202 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.50 42.0 3.42e-01 93.0% 67.6%
3959431 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.50 42.0 3.54e-01 93.0% 63.3%
4950591 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.50 43.0 3.32e-01 96.5% 65.4%