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IMGVR_UViG_3300046050_000037-3300046050-Ga0496843_02818_3142_3930

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300046050_000037-3300046050-Ga0496843_02818_3142_3930 ↗
Kingdom:: archaea

Quality

79.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-74

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4n06A02	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.96	84.0	4.85e-01	100.0%	12.1%
3ilxA02	1.10.287.2170	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.84	69.0	6.32e-01	96.9%	70.5%
1j1vA00	1.10.1750.10	Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain	0.71	60.0	4.30e-01	96.9%	72.3%
4j6eA01	3.40.50.20	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.69	53.0	3.67e-01	96.9%	23.3%
1y71A00	2.30.30.430	Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain	0.64	53.0	3.73e-01	96.9%	67.9%
1khvA05	1.20.960.20	Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A ›	0.64	49.0	3.67e-01	96.9%	36.1%
3waeA02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.61	50.0	3.23e-01	96.9%	23.9%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5024129	3390.1.1.0 ↗	extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT	0.95	84.0	7.47e-01	100.0%	71.1%
3561266	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.94	82.0	7.68e-01	100.0%	80.0%

D2 medium residues 121-253

PDB

Domain cluster: representative

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2lpbA00	1.10.287.2920	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.65	32.0	3.95e-01	81.2%	75.3%
4iejA00	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.59	32.0	4.04e-01	74.4%	90.7%
3umbA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.57	35.0	4.25e-01	70.7%	100.0%
2qmaA01	1.20.1650.10	Mainly Alpha › Up-down Bundle › PLP-dependent transferase-like › PLP-dependent transferases	0.57	27.0	3.21e-01	78.2%	65.1%
5v07Z02	1.10.150.20	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain	0.57	31.0	3.88e-01	77.4%	89.7%
2p3yA02	1.10.3360.10	Mainly Alpha › Orthogonal Bundle › VPA0735-like fold › VPA0735-like domain	0.55	42.0	4.61e-01	79.7%	100.0%
2g80A02	1.10.720.60	Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 ›	0.55	30.0	3.69e-01	84.2%	87.2%
6j8eA01	1.20.120.350	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C	0.54	40.0	4.42e-01	85.0%	95.3%
1lkvX02	1.10.220.30	Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain	0.54	30.0	3.03e-01	94.7%	53.8%
1gcvB00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.53	36.0	3.59e-01	84.2%	66.2%
1ohuA00	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.53	30.0	2.80e-01	83.5%	41.8%
1u6zA03	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.53	43.0	4.22e-01	88.7%	83.6%
3vhlA02	1.20.58.740	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C	0.52	29.0	3.09e-01	93.2%	58.3%
3lzhA02	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.51	39.0	3.44e-01	79.7%	72.6%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3880653	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.63	40.0	3.45e-01	87.2%	41.0%
4025355	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.59	39.0	3.23e-01	87.2%	36.3%
3483556	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.52	37.0	2.91e-01	85.7%	37.0%
4426612	195.1.1.1 ↗	alpha complex topology › NusB-like › NusB-like › NusB-like › NusB	0.51	35.0	3.53e-01	85.0%	67.4%
5049593	101.8.1.4 ↗	alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f	0.51	43.0	3.46e-01	94.0%	63.7%
3715173	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.50	29.0	3.13e-01	100.0%	66.4%
3703944	604.5.1.71 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › V_ATPase_I	0.50	40.0	3.62e-01	94.7%	62.8%