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IMGVR_UViG_3300046055_000003-3300046055-Ga0496807_04072_3664_4224
Arc-VirIMGVR_UViG_3300046055_000003-3300046055-Ga0496807_04072_3664_4224
Identity
- Kingdom:
- archaea
Quality
87.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-37_102-183
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 28.0 | 3.71e-01 | 71.6% | 65.2% |
| 3a06B03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.62 | 43.0 | 4.87e-01 | 72.4% | 94.3% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.61 | 42.0 | 3.78e-01 | 70.7% | 82.3% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 41.0 | 3.84e-01 | 75.9% | 78.5% |
| 3ltoA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.56 | 42.0 | 4.06e-01 | 78.4% | 97.0% |
| 4adzA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.56 | 38.0 | 4.34e-01 | 94.0% | 91.1% |
| 2uv8A07 | 6.10.140.1410 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 34.0 | 3.92e-01 | 81.9% | 83.5% |
| 2rdcA00 | 1.10.287.800 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 | 0.55 | 42.0 | 3.98e-01 | 79.3% | 88.7% |
| 7cj3A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 43.0 | 3.36e-01 | 85.3% | 57.0% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 40.0 | 4.10e-01 | 76.7% | 91.7% |
| 1q16C01 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.53 | 39.0 | 3.20e-01 | 76.7% | 74.8% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.53 | 28.0 | 3.62e-01 | 84.5% | 93.4% |
| 4gc0A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.53 | 40.0 | 3.26e-01 | 81.9% | 80.7% |
| 5z7qA00 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.52 | 37.0 | 3.20e-01 | 72.4% | 65.9% |
| 4w8pA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.52 | 36.0 | 3.48e-01 | 70.7% | 87.7% |
| 1f6fA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 38.0 | 3.29e-01 | 77.6% | 83.6% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 38.0 | 3.48e-01 | 77.6% | 94.7% |
| 1aluA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 37.0 | 3.39e-01 | 75.9% | 93.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3573570 | 604.33.1.0 ↗ | alpha bundles › Spectrin repeat-like › Repulsive guidance molecule (RGM) N-terminal domain › Repulsive guidance molecule (RGM) N-terminal domain | 0.66 | 49.0 | 5.38e-01 | 78.4% | 100.0% |
| 5036646 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.66 | 42.0 | 4.64e-01 | 70.7% | 82.2% |
| 3974230 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.63 | 43.0 | 4.54e-01 | 70.7% | 95.2% |
| 4964045 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.62 | 39.0 | 4.42e-01 | 70.7% | 84.7% |
| 3839085 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.61 | 38.0 | 4.10e-01 | 70.7% | 72.0% |
| 3916145 | 148.1.1.5 ↗ | alpha arrays › Histone-like › Histone-related › Histone › TFIID-18kDa | 0.60 | 43.0 | 3.40e-01 | 75.0% | 92.9% |
| 3290011 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.59 | 35.0 | 3.82e-01 | 89.7% | 70.5% |
| 3928811 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.54 | 39.0 | 2.88e-01 | 76.7% | 78.2% |
| 4237 | 5069.1.2.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Respiratory nitrate reductase 1 gamma chain › Nitrate_red_gam | 0.54 | 39.0 | 3.20e-01 | 76.7% | 70.5% |
| 5010954 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.53 | 34.0 | 3.54e-01 | 93.1% | 68.2% |
D2
high
residues 49-98
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hr7C02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.71 | 48.0 | 3.10e-01 | 70.0% | 45.8% |
| 8gr7A01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.68 | 53.0 | 3.21e-01 | 84.0% | 18.4% |
| 1e7lA02 | 1.10.720.10 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.68 | 57.0 | 5.53e-01 | 92.0% | 92.7% |
| 7miqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.67 | 42.0 | 3.24e-01 | 92.0% | 29.1% |
| 3iuoA00 | 1.10.10.1390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ | 0.65 | 38.0 | 2.99e-01 | 100.0% | 24.8% |
| 2culA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.65 | 55.0 | 3.55e-01 | 94.0% | 91.6% |
| 5kfnA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.64 | 53.0 | 3.76e-01 | 100.0% | 54.8% |
| 1s7zA01 | 1.20.120.780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr | 0.62 | 54.0 | 4.35e-01 | 100.0% | 88.1% |
| 2jvnA00 | 3.90.640.80 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.60 | 51.0 | 3.86e-01 | 98.0% | 84.9% |
| 3a04A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.60 | 48.0 | 3.19e-01 | 98.0% | 53.8% |
| 1ufzA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 44.0 | 4.25e-01 | 82.0% | 72.4% |
| 6p10B02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 43.0 | 3.64e-01 | 80.0% | 49.5% |
| 4l0fA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 48.0 | 2.84e-01 | 100.0% | 11.2% |
| 4rw0A00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.59 | 49.0 | 3.44e-01 | 98.0% | 89.1% |
| 1s4kA00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.58 | 50.0 | 3.79e-01 | 96.0% | 89.2% |
| 2ruhA00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.58 | 48.0 | 3.61e-01 | 96.0% | 61.1% |
| 1m3sB00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.57 | 51.0 | 3.46e-01 | 100.0% | 63.9% |
| 2w45A01 | 1.20.120.860 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Herpesvirus alkaline exonuclease, N-terminal domain | 0.57 | 46.0 | 3.72e-01 | 100.0% | 50.0% |
| 2py5A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 48.0 | 3.31e-01 | 100.0% | 95.1% |
| 1rr7A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 34.0 | 3.47e-01 | 74.0% | 60.4% |
| 3dl1A01 | 1.10.472.150 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Glucose-regulated metallo-peptidase M90, N-terminal domain | 0.56 | 48.0 | 3.94e-01 | 100.0% | 56.6% |
| 2p67A01 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 35.0 | 3.47e-01 | 70.0% | 55.8% |
| 2oblA02 | 1.20.1270.330 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 40.0 | 3.54e-01 | 78.0% | 98.6% |
| 3cl3A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 42.0 | 3.69e-01 | 100.0% | 60.7% |
| 2p6rA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 2.87e-01 | 98.0% | 48.0% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4319975 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.73 | 49.0 | 3.98e-01 | 70.0% | 41.1% |
| 5028731 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.72 | 49.0 | 4.55e-01 | 72.0% | 58.3% |
| 3676214 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.71 | 50.0 | 5.08e-01 | 78.0% | 74.0% |
| 5043822 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.70 | 48.0 | 3.53e-01 | 72.0% | 77.7% |
| 3239603 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.70 | 59.0 | 4.82e-01 | 100.0% | 59.0% |
| 3399447 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.69 | 59.0 | 5.25e-01 | 100.0% | 73.3% |
| 4213361 | 602.1.1.3 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_aromatic | 0.69 | 53.0 | 3.24e-01 | 84.0% | 72.2% |
| 3689931 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.68 | 55.0 | 5.14e-01 | 100.0% | 72.3% |
| 3331967 | 397.7.1.3 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › DUF842 | 0.68 | 46.0 | 4.62e-01 | 100.0% | 70.0% |
| 4133327 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.66 | 57.0 | 3.43e-01 | 100.0% | 21.1% |
| 3867508 | 110.1.1.22 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › SH3BP4_C, DEATH_SH3BP4 | 0.65 | 58.0 | 3.78e-01 | 100.0% | 27.9% |
| 4679975 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.65 | 52.0 | 3.10e-01 | 88.0% | 48.2% |
| 5059555 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.65 | 56.0 | 3.38e-01 | 100.0% | 45.1% |
| 4426361 | 110.1.1.16 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › SH3BP4_C | 0.65 | 53.0 | 4.09e-01 | 100.0% | 49.2% |
| 4510352 | 110.1.1.22 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › SH3BP4_C, DEATH_SH3BP4 | 0.64 | 53.0 | 4.00e-01 | 100.0% | 45.7% |
| 3169789 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.64 | 54.0 | 5.04e-01 | 96.0% | 81.5% |
| 3905883 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.64 | 55.0 | 3.81e-01 | 100.0% | 55.0% |
| 3327914 | 148.1.3.205 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_At3g28540 | 0.63 | 53.0 | 4.88e-01 | 92.0% | 76.9% |
| 4020935 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.62 | 53.0 | 3.07e-01 | 100.0% | 40.8% |
| 3973959 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.62 | 53.0 | 3.36e-01 | 94.0% | 97.5% |
| 3701251 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.62 | 55.0 | 3.47e-01 | 100.0% | 28.8% |
| 5077374 | 2005.1.1.2 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1b | 0.61 | 49.0 | 3.00e-01 | 98.0% | 36.3% |
| 4363025 | 2008.1.1.195 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_Eco47II | 0.60 | 51.0 | 3.35e-01 | 100.0% | 30.9% |
| 3473395 | 4156.1.1.4 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C | 0.60 | 52.0 | 3.87e-01 | 100.0% | 42.2% |
| 3911637 | 110.1.1.2 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › CARD | 0.60 | 51.0 | 4.18e-01 | 100.0% | 67.0% |
| 3667102 | 148.1.3.205 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_At3g28540 | 0.59 | 49.0 | 4.30e-01 | 92.0% | 64.0% |
| 3617896 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.59 | 49.0 | 4.27e-01 | 100.0% | 63.5% |
| 3498092 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.59 | 50.0 | 3.45e-01 | 100.0% | 46.3% |
| 4944614 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.58 | 48.0 | 3.00e-01 | 96.0% | 64.8% |
| 3518379 | 3502.1.1.1 ↗ | alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG | 0.57 | 42.0 | 4.16e-01 | 88.0% | 72.7% |
| 4101322 | 2004.1.1.60 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SKI | 0.56 | 43.0 | 2.98e-01 | 88.0% | 22.6% |
| 3695897 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.56 | 44.0 | 2.53e-01 | 86.0% | 16.7% |
| 2486922 | 7048.1.1.1 ↗ | a+b complex topology › head domain of ScoMcrA › head domain of ScoMcrA › head domain of ScoMcrA › ScoMcrA_N | 0.55 | 43.0 | 4.07e-01 | 86.0% | 72.9% |
| 3603105 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 37.0 | 3.34e-01 | 78.0% | 53.3% |
| 3319315 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.51 | 46.0 | 2.85e-01 | 100.0% | 79.6% |
| 3863863 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.51 | 44.0 | 2.73e-01 | 100.0% | 97.9% |
| 4984189 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.50 | 44.0 | 3.11e-01 | 96.0% | 59.3% |