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IMGVR_UViG_3300046450_002951-3300046450-Ga0491204_0024708_4945_5172

Arc-Vir

IMGVR_UViG_3300046450_002951-3300046450-Ga0491204_0024708_4945_5172

Identity

Kingdom:
archaea

Quality

90.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-66
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b62A00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.69 50.0 3.84e-01 77.8% 90.2%
6aeoB01 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.65 44.0 3.53e-01 73.0% 94.1%
3khnB00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.63 46.0 3.47e-01 77.8% 82.8%
3wpwA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.63 45.0 3.52e-01 77.8% 86.6%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 49.0 4.00e-01 100.0% 46.5%
3tixB01 2.40.290.20 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.59 49.0 3.85e-01 96.8% 89.2%
3b46A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 45.0 3.36e-01 84.1% 49.1%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.59 46.0 3.77e-01 100.0% 46.6%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 43.0 3.59e-01 100.0% 44.1%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.58 32.0 3.45e-01 82.5% 60.8%
2zovA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.57 41.0 3.14e-01 79.4% 74.7%
5cxmA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.57 39.0 3.46e-01 100.0% 46.5%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 44.0 3.11e-01 87.3% 47.1%
2h21B01 3.90.1410.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 1 › set domain protein methyltransferase, domain 1 0.54 40.0 2.80e-01 85.7% 86.7%
3cbfA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 39.0 2.99e-01 84.1% 37.7%
4nkwA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 41.0 2.57e-01 92.1% 77.4%
2gmqA00 2.40.450.10 Mainly Beta › Beta Barrel › PUA domain-like fold › PUA domain-like domain 0.53 38.0 3.44e-01 82.5% 87.9%
3vtiA03 3.90.870.40 Alpha Beta › Alpha-Beta Complex › DHBP synthase › 0.53 43.0 3.63e-01 98.4% 75.2%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.52 39.0 3.09e-01 84.1% 52.7%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.57e-01 85.7% 24.2%
6ewnA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.28e-01 79.4% 96.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 35.0 3.30e-01 82.5% 57.3%
5cegD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.51 40.0 3.54e-01 98.4% 56.4%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 40.0 2.77e-01 93.7% 74.3%
4e6nB00 3.30.1610.20 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Hen1, N-terminal domain 0.50 39.0 2.78e-01 88.9% 46.8%
1bvyB00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.50 41.0 2.53e-01 95.2% 73.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045566 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 47.0 4.02e-01 100.0% 43.8%
3196528 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.67 44.0 4.56e-01 90.5% 71.7%
4985746 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 44.0 3.77e-01 100.0% 41.0%
4977899 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 45.0 3.77e-01 100.0% 41.8%
5074649 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 46.0 3.65e-01 100.0% 37.6%
5050684 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 45.0 3.78e-01 100.0% 42.7%
3281830 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.63 50.0 3.90e-01 100.0% 40.0%
1348659 301.3.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA 0.63 45.0 3.52e-01 77.8% 86.6%
2499495 301.3.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA 0.62 45.0 3.35e-01 77.8% 78.4%
4008652 301.3.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA 0.62 45.0 3.37e-01 79.4% 74.9%
5016233 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 45.0 3.79e-01 100.0% 45.4%
4945992 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 49.0 3.84e-01 100.0% 41.9%
3965700 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.62 48.0 3.94e-01 100.0% 45.4%
3294246 2484.1.1.15 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.61 47.0 3.45e-01 85.7% 33.5%
4950075 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.61 48.0 3.96e-01 100.0% 47.0%
4928123 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 50.0 3.96e-01 100.0% 43.8%
4182188 301.3.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA 0.61 44.0 3.36e-01 77.8% 83.1%
5051250 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 49.0 3.85e-01 100.0% 42.3%
4535669 301.3.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA 0.61 44.0 3.39e-01 79.4% 82.5%
4889833 206.1.1.27 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › YukC 0.60 46.0 3.20e-01 84.1% 51.6%
3717533 4967.1.1.12 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › U6-snRNA_bdg,U5_2-snRNA_bdg 0.60 45.0 2.94e-01 84.1% 49.8%
5048375 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 48.0 3.84e-01 100.0% 44.8%
5073525 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.59 47.0 3.76e-01 100.0% 44.0%
3503347 223.1.1.18 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_4 0.58 45.0 3.35e-01 90.5% 61.1%
4952102 873.1.1.22 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF25939 0.58 43.0 3.08e-01 81.0% 42.6%
4999755 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 49.0 3.78e-01 100.0% 41.7%
3603234 242.1.1.2 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 0.58 43.0 3.67e-01 82.5% 75.5%
4976809 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.57 45.0 3.60e-01 100.0% 43.1%
4978592 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.56 45.0 3.69e-01 100.0% 47.8%
4168408 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 41.0 3.24e-01 79.4% 71.1%
3494790 223.1.1.115 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30396 0.55 40.0 3.22e-01 100.0% 37.7%
3587572 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 40.0 3.16e-01 79.4% 73.1%
4033928 241.9.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.54 44.0 3.67e-01 96.8% 52.0%
4997643 2004.1.1.97 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB 0.54 36.0 2.57e-01 87.3% 21.4%
3295967 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.53 41.0 3.16e-01 85.7% 37.4%
3666222 4099.1.1.2 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 0.53 42.0 3.72e-01 87.3% 68.9%
1712440 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.52 42.0 3.61e-01 100.0% 55.3%
3941952 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.51 39.0 2.29e-01 85.7% 8.9%
3612848 12.5.1.10 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › Casc1_N 0.50 40.0 2.58e-01 90.5% 32.4%
4302779 304.123.1.1 ↗ a+b two layers › Alpha-beta plaits › PF0523-like › PF0523-like › CGI-121 0.50 42.0 3.30e-01 96.8% 78.6%