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IMGVR_UViG_3300047354_001576-3300047354-Ga0494540_0011044_46_831

Arc-Vir

IMGVR_UViG_3300047354_001576-3300047354-Ga0494540_0011044_46_831

Quality

92.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-130
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wnzA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.70 48.0 5.52e-01 100.0% 96.7%
7lgnB01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.62 37.0 4.33e-01 100.0% 90.0%
6melB02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.59 38.0 4.41e-01 87.3% 95.2%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931724 206.1.3.36 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_TupA 0.88 64.0 4.74e-01 100.0% 32.9%
5021152 206.1.3.36 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_TupA 0.87 64.0 4.82e-01 100.0% 35.2%
5043557 206.1.3.41 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_Ter 0.67 40.0 3.17e-01 100.0% 29.6%
3387883 206.1.3.36 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_TupA 0.66 62.0 4.51e-01 100.0% 42.9%
4318791 206.1.3.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 0.64 47.0 3.73e-01 100.0% 39.6%
3799969 206.1.3.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C 0.63 41.0 3.44e-01 100.0% 39.0%
4599970 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.60 45.0 3.64e-01 100.0% 41.7%
D2 high residues 141-259
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14305.12 best ATPgrasp_TupA 64.0 2.20e-17 98.3% 39.8%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uc8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.79 54.0 6.06e-01 100.0% 88.3%
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.78 55.0 6.15e-01 100.0% 90.5%
1z2nX02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.76 49.0 5.09e-01 90.8% 70.6%
4iwxA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.74 59.0 6.13e-01 100.0% 89.2%
3t7aA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.72 48.0 3.99e-01 82.4% 40.1%
2pvpA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.68 60.0 5.61e-01 100.0% 76.7%
5hv6A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.68 54.0 5.24e-01 82.4% 96.1%
3r5xD02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.66 60.0 5.46e-01 100.0% 74.8%
1kblA06 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.65 47.0 5.16e-01 84.9% 90.8%
5oomJ01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.65 36.0 4.64e-01 79.0% 97.0%
4mamB03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.64 55.0 4.67e-01 100.0% 58.5%
1wibA00 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.63 37.0 4.10e-01 83.2% 72.8%
2pn1A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.63 53.0 5.34e-01 100.0% 89.2%
1vkzA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 56.0 5.39e-01 100.0% 88.1%
1wraA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.61 46.0 3.49e-01 80.7% 99.3%
3lp8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.61 56.0 5.32e-01 100.0% 89.1%
4dimA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 55.0 4.53e-01 100.0% 56.1%
4xfjA02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.59 46.0 3.94e-01 81.5% 74.9%
1j20A02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.58 45.0 3.70e-01 81.5% 65.7%
2b5iB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 35.0 3.85e-01 87.4% 77.7%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 34.0 4.01e-01 86.6% 97.5%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.52 27.0 3.20e-01 96.6% 72.7%
1khiA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 31.0 3.86e-01 84.9% 98.6%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 30.0 3.07e-01 96.6% 58.5%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931724 206.1.3.36 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_TupA 0.89 81.0 5.85e-01 97.5% 39.1%
3943698 206.1.3.36 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_TupA 0.87 80.0 5.89e-01 98.3% 42.2%
5021152 206.1.3.36 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_TupA 0.85 80.0 5.93e-01 100.0% 43.3%
3387883 206.1.3.36 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_TupA 0.81 77.0 5.49e-01 100.0% 38.1%
5053864 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.80 57.0 4.83e-01 100.0% 47.8%
5017005 206.1.3.31 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RLAN 0.77 45.0 4.09e-01 100.0% 44.5%
4950085 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.76 57.0 4.33e-01 100.0% 35.8%
5071931 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.76 43.0 3.89e-01 93.3% 41.9%
5062623 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.76 56.0 4.75e-01 100.0% 49.2%
5028326 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.75 58.0 4.90e-01 100.0% 50.5%
4405336 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.75 58.0 4.67e-01 100.0% 44.7%
5062096 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.74 56.0 4.21e-01 100.0% 34.4%
5051685 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.74 55.0 4.61e-01 99.2% 47.9%
1806544 206.1.3.18 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 0.74 54.0 4.06e-01 99.2% 33.1%
5033776 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.74 68.0 5.25e-01 100.0% 54.9%
5036959 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.73 51.0 4.42e-01 100.0% 47.8%
5015366 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.72 58.0 4.84e-01 100.0% 52.1%
3261392 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.72 60.0 4.74e-01 100.0% 46.8%
4962616 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.71 59.0 4.34e-01 100.0% 36.1%
5017004 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.71 61.0 4.90e-01 100.0% 49.8%
4957115 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.71 62.0 4.90e-01 100.0% 49.1%
4985499 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.71 61.0 5.03e-01 100.0% 54.0%
3969881 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.71 62.0 4.51e-01 100.0% 37.3%
None 0.70 60.0 3.77e-01 100.0% 19.3%
3970872 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.70 62.0 5.03e-01 100.0% 53.7%
3499810 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.70 60.0 3.79e-01 100.0% 19.5%
3787619 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.70 55.0 5.65e-01 100.0% 87.0%
4932473 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.68 52.0 4.15e-01 81.5% 49.4%
4589832 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.67 50.0 3.53e-01 100.0% 26.3%
4976812 206.1.3.8 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 0.67 58.0 4.35e-01 100.0% 39.9%
None 0.67 59.0 4.84e-01 100.0% 53.8%
5051783 206.1.3.3 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.67 54.0 3.88e-01 84.9% 39.7%
4142173 206.1.3.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.66 62.0 4.77e-01 100.0% 49.8%
4680521 206.1.3.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.65 60.0 4.74e-01 100.0% 51.7%
2905 3781.1.1.1 a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N 0.63 37.0 4.10e-01 83.2% 72.8%
4008119 5.1.5.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 0.62 36.0 4.33e-01 84.9% 89.3%
3982470 2.1.1.273 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF1481 0.62 36.0 4.32e-01 84.9% 89.3%
137614 206.1.3.3 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.61 56.0 3.83e-01 100.0% 31.1%
3281732 206.1.3.3 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.60 55.0 3.96e-01 99.2% 40.3%
3592378 253.1.1.0 a+b complex topology › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C 0.59 46.0 3.91e-01 81.5% 69.5%
None 0.59 46.0 3.89e-01 81.5% 73.7%
3716062 253.1.1.1 a+b complex topology › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Arginosuc_syn_C 0.59 46.0 3.79e-01 81.5% 64.4%
4470391 253.1.1.1 a+b complex topology › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Arginosuc_syn_C 0.59 46.0 3.62e-01 81.5% 60.0%
4973990 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.59 54.0 3.88e-01 97.5% 40.3%
4176014 206.1.3.3 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.59 53.0 3.92e-01 97.5% 42.7%
4467214 253.1.1.1 a+b complex topology › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Argininosuccinate synthetase-C › Arginosuc_syn_C 0.58 45.0 3.53e-01 81.5% 58.3%
3838338 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 35.0 4.10e-01 88.2% 90.6%
4046845 11.1.1.1106 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF25835 0.53 31.0 3.45e-01 80.7% 72.6%
4863267 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.53 32.0 3.95e-01 81.5% 100.0%
5059796 4326.1.1.0 a+b two layers › ERH-like › ERH-like › ERH-like 0.52 30.0 3.78e-01 88.2% 95.7%
2756600 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.52 31.0 3.85e-01 80.7% 97.3%
5081122 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.50 34.0 3.65e-01 79.8% 82.0%