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IMGVR_UViG_3300047376_001030-3300047376-Ga0494523_0005356_503_2317

Arc-Vir

IMGVR_UViG_3300047376_001030-3300047376-Ga0494523_0005356_503_2317

Quality

78.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-152
PDB
D2 high residues 444-505
PDB
D3 high residues 536-603
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ufmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 59.0 5.50e-01 100.0% 73.8%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 5.49e-01 100.0% 98.3%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 5.20e-01 100.0% 79.3%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 53.0 5.01e-01 100.0% 75.0%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 5.28e-01 100.0% 96.9%
3a1yA00 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 43.0 4.51e-01 97.1% 82.8%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.91e-01 100.0% 75.9%
6hxlB01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.62 43.0 3.61e-01 73.5% 81.8%
3oouA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 43.0 4.54e-01 98.5% 98.2%
3eujB00 1.10.225.40 Mainly Alpha › Orthogonal Bundle › NK-Lysin › MukF, C-terminal domain 0.59 51.0 4.73e-01 100.0% 92.2%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.57e-01 100.0% 80.5%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 47.0 4.44e-01 100.0% 77.6%
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 38.0 3.67e-01 73.5% 74.4%
2gsdA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 43.0 3.16e-01 97.1% 53.1%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4968278 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.74 65.0 6.08e-01 100.0% 84.7%
3727217 101.1.2.384 alpha arrays › HTH › HTH › winged helix domain › Myb_DNA-bind_8 0.72 46.0 5.13e-01 72.1% 88.0%
5027498 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 58.0 5.75e-01 100.0% 88.6%
3617966 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 5.70e-01 100.0% 91.4%
5077087 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 5.01e-01 100.0% 67.4%
3968254 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.67 49.0 4.42e-01 100.0% 56.8%
2325472 101.1.2.25 alpha arrays › HTH › HTH › winged helix domain › FUR 0.66 56.0 4.59e-01 100.0% 50.0%
3587546 101.1.2.19 alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.66 54.0 4.12e-01 100.0% 38.7%
4447638 101.1.2.759 alpha arrays › HTH › HTH › winged helix domain › Sigma70_r1_1 0.66 50.0 5.12e-01 91.2% 89.2%
4032197 101.1.2.231 alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.65 55.0 4.67e-01 100.0% 56.5%
5035687 101.1.2.948 alpha arrays › HTH › HTH › winged helix domain › PF27297 0.65 53.0 4.67e-01 100.0% 60.0%
3215989 101.1.1.289 alpha arrays › HTH › HTH › Three-helical HTH › HOCHOB 0.65 49.0 4.73e-01 83.8% 77.5%
3173335 1091.1.1.1 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.65 45.0 4.73e-01 100.0% 83.3%
3096050 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 47.0 4.09e-01 100.0% 50.5%
4262488 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 52.0 4.29e-01 100.0% 48.5%
4964972 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 5.22e-01 100.0% 96.8%
3516468 1091.1.1.1 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.63 44.0 4.44e-01 100.0% 72.9%
3912838 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.63 54.0 4.99e-01 100.0% 78.9%
4657866 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.63 51.0 4.95e-01 98.5% 81.2%
3602476 1091.1.1.1 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.62 42.0 4.51e-01 70.6% 89.1%
3614122 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.90e-01 100.0% 78.4%
4426661 1091.1.1.1 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.61 43.0 4.39e-01 73.5% 78.5%
4970622 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 4.48e-01 98.5% 68.9%
3710284 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.68e-01 100.0% 97.3%
3945505 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.51 43.0 3.69e-01 100.0% 96.6%
D4 medium residues 153-257_320-404
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xqkA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.67 44.0 5.08e-01 74.7% 88.9%
3bm3A00 3.40.91.80 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.62 51.0 4.57e-01 85.3% 90.7%
2b4aA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 35.0 4.41e-01 95.3% 98.3%
3dmyA02 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.57 37.0 4.29e-01 94.7% 88.6%
1fdrA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.56 31.0 3.48e-01 88.4% 67.8%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 21.0 3.28e-01 86.3% 86.7%
5t3yA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 35.0 4.15e-01 96.8% 94.4%
4s1wB02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 35.0 3.93e-01 94.2% 82.2%
2amlA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.54 34.0 3.86e-01 91.6% 81.0%
7o62B01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 37.0 4.33e-01 96.3% 100.0%
3fj1A02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 32.0 3.78e-01 86.3% 84.6%
4wqmA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.50 27.0 3.15e-01 93.2% 70.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4127413 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.80 45.0 6.04e-01 87.4% 100.0%
4222489 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 46.0 5.96e-01 90.5% 100.0%
4446863 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 48.0 5.93e-01 92.1% 95.9%
4053762 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.76 47.0 5.82e-01 97.4% 96.7%
3976034 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.74 41.0 5.26e-01 73.7% 91.3%
3283255 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 37.0 5.21e-01 83.2% 100.0%
4949337 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 50.0 4.69e-01 75.8% 77.4%
4525523 2008.1.1.85 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_TdeIII 0.66 53.0 4.73e-01 82.6% 88.2%
5025921 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 35.0 4.56e-01 76.3% 94.5%
5056661 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 48.0 5.39e-01 85.8% 100.0%
5056915 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 48.0 5.13e-01 84.2% 91.5%
4947491 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 47.0 5.09e-01 96.3% 94.4%
4936462 2008.1.1.78 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_endonuc 0.60 46.0 5.04e-01 94.7% 95.5%
4990485 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 46.0 4.79e-01 87.4% 86.3%
5009414 327.5.1.3 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_2 0.59 26.0 3.69e-01 87.9% 86.7%
3944117 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 47.0 5.12e-01 87.9% 99.4%
167880 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.58 36.0 4.33e-01 94.7% 92.6%
5047895 327.5.1.10 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 0.58 27.0 3.61e-01 90.5% 84.2%
4951140 2007.9.1.3 a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain › CAP12-PCTIR_TIR 0.56 37.0 4.33e-01 96.8% 94.6%
5041197 2008.1.1.30 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Tn7_TnsA-like_N 0.54 44.0 4.67e-01 93.7% 94.8%
3253903 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.53 39.0 3.70e-01 91.6% 64.5%
4247735 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.53 44.0 2.90e-01 90.5% 21.1%
4163068 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 45.0 2.78e-01 91.1% 25.6%
4990214 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 37.0 3.80e-01 90.0% 73.7%
4225517 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.52 41.0 3.97e-01 89.5% 72.9%
4392521 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.52 44.0 3.83e-01 90.5% 66.7%
4950791 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.51 38.0 4.01e-01 78.4% 82.9%
3965872 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.51 40.0 3.52e-01 81.1% 76.5%
3839909 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.51 42.0 3.77e-01 91.1% 63.2%
D5 medium residues 258-319
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cs9B02 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.61 51.0 4.40e-01 98.4% 88.8%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 47.0 4.45e-01 93.5% 83.8%
1tdpA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.56 47.0 3.93e-01 96.8% 69.4%
4iggB02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 46.0 3.76e-01 95.2% 86.0%
2uv8A07 6.10.140.1410 Special › Helix non-globular › Helix Hairpins › 0.55 36.0 3.29e-01 83.9% 49.4%
2vkzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 36.0 2.40e-01 83.9% 16.0%
2au5A00 1.20.120.590 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like 0.54 46.0 3.74e-01 100.0% 82.9%
2yqyA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.54 46.0 3.64e-01 93.5% 95.2%
1zk8B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 36.0 2.86e-01 90.3% 32.6%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.53 38.0 3.40e-01 79.0% 59.4%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 43.0 4.01e-01 95.2% 79.0%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3287280 150.8.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.61 43.0 3.08e-01 75.8% 71.6%
4249312 304.41.1.1 a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.57 48.0 3.63e-01 96.8% 41.2%
3695367 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 38.0 2.68e-01 77.4% 55.1%