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IMGVR_UViG_3300047477_000271-3300047477-Ga0485305_002830_6545_6736

Arc-Vir

IMGVR_UViG_3300047477_000271-3300047477-Ga0485305_002830_6545_6736

Identity

Kingdom:
archaea

Quality

75.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-54
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.75 46.0 4.23e-01 70.6% 48.5%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 44.0 4.50e-01 74.5% 66.7%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 44.0 4.44e-01 72.5% 63.5%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 3.76e-01 72.5% 46.4%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 40.0 3.85e-01 90.2% 56.2%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 41.0 3.88e-01 70.6% 62.3%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 3.94e-01 72.5% 62.7%
5dm6H00 2.40.150.20 Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 0.59 44.0 3.34e-01 82.4% 75.4%
4nn5C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 42.0 3.50e-01 78.4% 87.9%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 47.0 3.53e-01 100.0% 59.6%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 42.0 3.67e-01 82.4% 84.5%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.36e-01 78.4% 89.2%
3lhoA01 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.56 42.0 2.80e-01 86.3% 24.7%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.56 41.0 3.75e-01 82.4% 70.4%
1x5aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.40e-01 78.4% 90.1%
3oksA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 37.0 2.65e-01 74.5% 52.8%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 36.0 3.53e-01 90.2% 63.2%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 3.23e-01 74.5% 69.9%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.03e-01 78.4% 49.5%
1x5kA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.18e-01 82.4% 92.1%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.51 35.0 2.70e-01 72.5% 32.6%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 2.97e-01 80.4% 55.9%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.00e-01 96.1% 50.3%
3rmuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 39.0 3.14e-01 100.0% 92.5%
1dpeA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 38.0 2.97e-01 82.4% 40.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025781 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 45.0 4.29e-01 78.4% 53.3%
3290094 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.73 55.0 4.15e-01 84.3% 40.8%
4177200 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.69 47.0 4.57e-01 72.5% 65.5%
3289911 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.68 52.0 3.90e-01 86.3% 40.0%
3930366 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.34e-01 72.5% 70.0%
3384082 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 43.0 4.82e-01 76.5% 100.0%
3749631 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.63 43.0 3.35e-01 70.6% 35.2%
3627275 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.16e-01 94.1% 65.0%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 3.71e-01 72.5% 46.3%
3230400 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 44.0 4.12e-01 94.1% 61.5%
3469800 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 40.0 3.58e-01 90.2% 45.0%
5082678 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 43.0 4.34e-01 84.3% 96.2%
3695326 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.58 45.0 3.47e-01 86.3% 43.2%
3697524 9.2.1.7 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF30970 0.57 40.0 3.34e-01 72.5% 54.4%
3388997 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 44.0 2.59e-01 86.3% 12.5%
3737805 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 44.0 3.99e-01 94.1% 61.3%
3206573 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.55 37.0 2.34e-01 70.6% 10.9%
3890362 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 42.0 3.86e-01 90.2% 64.3%
3269717 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 40.0 2.54e-01 88.2% 61.4%
3602033 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 36.0 2.13e-01 72.5% 31.1%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 40.0 3.76e-01 92.2% 67.7%
3934655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 40.0 3.56e-01 94.1% 55.3%
3644145 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 43.0 2.68e-01 96.1% 72.5%
3625555 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.52 37.0 3.69e-01 88.2% 74.5%
4228973 244.3.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › NifU_N 0.51 39.0 3.21e-01 98.0% 42.5%
3581032 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.50 36.0 3.10e-01 78.4% 88.9%
3946945 101.1.2.274 ↗ alpha arrays › HTH › HTH › winged helix domain › SgrR_N 0.50 43.0 2.87e-01 100.0% 37.4%