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IMGVR_UViG_3300048114_000266-3300048114-Ga0494428_0000022_14252_14647

Arc-Vir

IMGVR_UViG_3300048114_000266-3300048114-Ga0494428_0000022_14252_14647

Identity

Kingdom:
archaea

Quality

56.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 57-127
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.75 53.0 5.93e-01 91.5% 96.3%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 5.54e-01 91.5% 78.6%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.68 55.0 4.02e-01 87.3% 77.1%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 5.43e-01 91.5% 94.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.96e-01 84.5% 86.2%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.64 51.0 5.24e-01 91.5% 94.0%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 45.0 3.53e-01 74.6% 80.1%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 5.04e-01 91.5% 93.8%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 49.0 3.25e-01 87.3% 36.1%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 5.13e-01 87.3% 95.5%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 5.01e-01 95.8% 95.5%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.61 40.0 3.93e-01 88.7% 62.3%
2q78F00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 44.0 3.64e-01 78.9% 86.0%
4hg1A00 3.40.1580.30 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Domain of unknown function (DUF5066) 0.60 45.0 3.17e-01 80.3% 63.1%
6ihjC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 44.0 3.45e-01 81.7% 81.5%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 52.0 3.99e-01 100.0% 56.8%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 52.0 4.56e-01 97.2% 81.7%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.59 45.0 3.93e-01 83.1% 54.5%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.59 45.0 4.24e-01 87.3% 91.4%
6eufA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 45.0 3.02e-01 85.9% 34.1%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 4.05e-01 88.7% 98.2%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.58 48.0 3.80e-01 97.2% 62.0%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.57 39.0 4.35e-01 76.1% 100.0%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.49e-01 87.3% 96.9%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.56 38.0 2.61e-01 70.4% 41.8%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.56 42.0 3.19e-01 83.1% 31.9%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.56 43.0 4.18e-01 90.1% 73.5%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 43.0 3.72e-01 84.5% 100.0%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.56 44.0 3.58e-01 90.1% 78.1%
7qrlA01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.56 39.0 3.26e-01 76.1% 57.8%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.55 43.0 3.55e-01 88.7% 85.9%
1jkgB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.08e-01 80.3% 80.0%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 42.0 2.82e-01 87.3% 35.6%
1nw1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 40.0 3.73e-01 81.7% 91.7%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 41.0 2.84e-01 85.9% 42.5%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.53 37.0 3.28e-01 73.2% 78.0%
7bvaA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 36.0 2.61e-01 71.8% 23.9%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 46.0 3.91e-01 98.6% 88.5%
5c98B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 39.0 3.27e-01 80.3% 94.6%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.52 41.0 4.06e-01 88.7% 89.9%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.52 44.0 3.58e-01 98.6% 88.4%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.51 40.0 3.23e-01 88.7% 85.1%
3s5tA02 3.90.640.20 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Heat-shock cognate protein, ATPase 0.51 41.0 3.71e-01 88.7% 91.0%
1jrrA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 38.0 3.20e-01 80.3% 94.3%
3ck2A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 35.0 2.75e-01 74.6% 100.0%
2qwzA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 38.0 3.19e-01 83.1% 95.5%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.92e-01 91.5% 95.1%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 36.0 2.53e-01 77.5% 47.5%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4429179 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.75 47.0 5.65e-01 83.1% 100.0%
3976834 4.1.1.156 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2158 0.75 51.0 5.84e-01 90.1% 100.0%
3708283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 62.0 5.81e-01 91.5% 96.5%
3600139 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.20e-01 91.5% 70.9%
4640515 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.71 44.0 5.10e-01 83.1% 90.0%
2321269 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.70 58.0 5.54e-01 91.5% 78.6%
4014881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.82e-01 90.1% 100.0%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.79e-01 91.5% 92.0%
3706361 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 56.0 4.66e-01 88.7% 85.6%
4632710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 39.0 4.56e-01 71.8% 91.1%
3486056 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 49.0 3.92e-01 81.7% 43.7%
3313139 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.65 56.0 4.18e-01 94.4% 85.7%
3482559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 51.0 3.84e-01 84.5% 100.0%
5055961 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.65 56.0 5.42e-01 95.8% 86.3%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 5.09e-01 91.5% 83.5%
4078162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.26e-01 91.5% 91.9%
4281699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.21e-01 91.5% 93.3%
3458523 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.64 48.0 4.12e-01 81.7% 80.0%
3492557 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.63 50.0 4.48e-01 87.3% 61.0%
3473407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.89e-01 85.9% 86.7%
4976896 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 53.0 4.88e-01 95.8% 71.6%
4196537 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.63 48.0 4.78e-01 83.1% 82.7%
5072694 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.62 44.0 4.15e-01 95.8% 62.4%
3669494 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 53.0 4.12e-01 94.4% 92.0%
3749631 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.62 40.0 3.51e-01 70.4% 44.8%
3481480 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.61 45.0 4.02e-01 97.2% 55.0%
3647116 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.61 50.0 4.29e-01 95.8% 87.2%
3931905 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.39e-01 94.4% 90.4%
3214653 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.49e-01 91.5% 100.0%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.85e-01 94.4% 98.8%
3918299 4.1.1.376 ↗ beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.59 48.0 4.83e-01 90.1% 91.4%
4318415 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 51.0 4.62e-01 94.4% 93.7%
4318553 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.59 45.0 3.04e-01 83.1% 94.3%
3637238 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.59 47.0 4.25e-01 88.7% 97.0%
3402094 243.3.1.35 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF229 0.59 40.0 3.61e-01 71.8% 85.7%
862 9.4.1.1 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.59 46.0 4.39e-01 94.4% 73.2%
4645538 4.1.1.52 ↗ beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.59 45.0 4.51e-01 85.9% 80.0%
4972564 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.58 43.0 3.92e-01 94.4% 58.9%
3282563 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.58 43.0 3.12e-01 80.3% 75.2%
3961894 2.4.1.3 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.58 38.0 3.30e-01 71.8% 40.8%
5019488 5090.1.1.6 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer 0.57 43.0 3.43e-01 81.7% 60.0%
3270645 5.1.3.25 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.57 45.0 2.95e-01 87.3% 65.5%
3282412 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.57 41.0 3.47e-01 77.5% 45.5%
3248970 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.56 42.0 3.69e-01 83.1% 65.5%
5014272 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 42.0 4.30e-01 81.7% 91.4%
5036626 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 40.0 2.55e-01 80.3% 18.5%
5018923 809.2.1.0 ↗ a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.54 39.0 3.92e-01 83.1% 74.7%
3476559 5.1.13.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain of DCAF15 › DCAF15_WD40 0.54 43.0 2.84e-01 93.0% 83.5%
3462090 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.53 46.0 2.96e-01 100.0% 93.1%
3637442 5.1.4.254 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.52 41.0 2.64e-01 88.7% 37.9%
3906313 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 42.0 2.71e-01 91.5% 53.3%
2803991 3209.1.1.1 ↗ a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e 0.52 41.0 3.28e-01 87.3% 59.1%
3921266 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.52 44.0 2.66e-01 97.2% 87.8%
3318785 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 2.85e-01 98.6% 58.1%
3934802 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.52 34.0 3.14e-01 70.4% 50.5%
3949297 3523.1.1.1 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.51 41.0 3.73e-01 94.4% 94.3%
3858175 5.1.11.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.51 42.0 2.71e-01 94.4% 30.8%
3624476 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 42.0 2.57e-01 95.8% 75.7%
3947165 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 35.0 2.86e-01 74.6% 55.3%
3657857 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.50 37.0 2.50e-01 77.5% 74.8%
3742766 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 43.0 2.86e-01 98.6% 96.4%
3324823 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.50 35.0 2.92e-01 74.6% 85.9%