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IMGVR_UViG_3300048114_000266-3300048114-Ga0494428_0000022_31311_31469
Arc-VirIMGVR_UViG_3300048114_000266-3300048114-Ga0494428_0000022_31311_31469
Identity
- Kingdom:
- archaea
Quality
72.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-51
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3w20A00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.82 | 59.0 | 3.68e-01 | 85.1% | 14.6% |
| 1wg1A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.64 | 45.0 | 4.07e-01 | 78.7% | 97.2% |
| 3k59A02 | 3.30.70.2250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif | 0.64 | 45.0 | 4.13e-01 | 78.7% | 100.0% |
| 2jeuA02 | 2.170.200.10 | Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain | 0.60 | 48.0 | 3.95e-01 | 100.0% | 83.2% |
| 3uyjA00 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.59 | 45.0 | 2.90e-01 | 85.1% | 17.2% |
| 1n26A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 43.0 | 3.81e-01 | 85.1% | 51.3% |
| 1wc1C00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.58 | 42.0 | 2.93e-01 | 83.0% | 55.7% |
| 3lnbA00 | 3.30.2140.20 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › | 0.58 | 47.0 | 3.09e-01 | 100.0% | 40.9% |
| 2jz6A01 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.57 | 39.0 | 3.92e-01 | 85.1% | 68.0% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.57 | 43.0 | 4.12e-01 | 95.7% | 72.7% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.56 | 40.0 | 3.70e-01 | 80.9% | 65.2% |
| 5utkA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 3.41e-01 | 83.0% | 43.3% |
| 1h0hB01 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 40.0 | 2.98e-01 | 83.0% | 89.3% |
| 1iyjB03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 41.0 | 3.05e-01 | 85.1% | 58.5% |
| 4l80D00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.55 | 37.0 | 2.26e-01 | 72.3% | 25.3% |
| 5l09B00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.55 | 41.0 | 3.00e-01 | 91.5% | 86.6% |
| 7y8sA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.26e-01 | 83.0% | 47.4% |
| 6z3tA01 | 1.10.3370.10 | Mainly Alpha › Orthogonal Bundle › Preprotein translocase SecY subunit › SecY subunit domain | 0.54 | 37.0 | 2.29e-01 | 78.7% | 32.9% |
| 4wd3A02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 38.0 | 3.38e-01 | 80.9% | 56.0% |
| 3l5hA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 3.15e-01 | 85.1% | 44.9% |
| 1kt0A02 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 41.0 | 3.27e-01 | 97.9% | 70.2% |
| 3bexA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 36.0 | 2.93e-01 | 80.9% | 74.1% |
| 8afoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.21e-01 | 83.0% | 44.3% |
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.51 | 38.0 | 2.32e-01 | 100.0% | 75.5% |
| 3up1A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.06e-01 | 85.1% | 40.4% |
| 2k47A00 | 1.10.8.440 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Vesicular stomatitis virus phosphoprotein C-terminal domain | 0.51 | 39.0 | 3.57e-01 | 97.9% | 95.9% |
| 1s4dE02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.51 | 39.0 | 2.98e-01 | 95.7% | 85.6% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.50 | 35.0 | 2.71e-01 | 89.4% | 27.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4977075 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.78 | 55.0 | 4.92e-01 | 74.5% | 93.8% |
| 3362601 | 148.1.3.176 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF1677 | 0.66 | 45.0 | 4.10e-01 | 85.1% | 52.3% |
| 4160981 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.63 | 48.0 | 3.24e-01 | 89.4% | 25.2% |
| 3539622 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.62 | 46.0 | 3.33e-01 | 83.0% | 36.6% |
| 3771477 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.61 | 46.0 | 3.28e-01 | 87.2% | 33.3% |
| 3877236 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.61 | 46.0 | 3.28e-01 | 87.2% | 33.3% |
| 4990106 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.61 | 47.0 | 2.72e-01 | 87.2% | 27.3% |
| 4022610 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.61 | 45.0 | 2.77e-01 | 85.1% | 11.6% |
| 3739650 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.60 | 45.0 | 3.28e-01 | 87.2% | 36.7% |
| 3788504 | 5061.1.1.2 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY,Plug_translocon | 0.60 | 45.0 | 2.63e-01 | 87.2% | 30.0% |
| 5071156 | 3714.1.1.1 ↗ | a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical | 0.59 | 44.0 | 3.02e-01 | 87.2% | 100.0% |
| 3738246 | 5061.1.1.2 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY,Plug_translocon | 0.59 | 45.0 | 2.64e-01 | 87.2% | 31.2% |
| 3256773 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 41.0 | 3.03e-01 | 87.2% | 24.7% |
| 4977680 | 5061.1.1.0 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit | 0.58 | 44.0 | 2.54e-01 | 87.2% | 34.0% |
| 3894181 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.57 | 42.0 | 2.96e-01 | 89.4% | 22.9% |
| 2035461 | 3380.1.1.1 ↗ | a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 | 0.57 | 42.0 | 4.05e-01 | 95.7% | 71.4% |
| 3173132 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 44.0 | 3.37e-01 | 93.6% | 83.2% |
| 1937720 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.56 | 42.0 | 3.23e-01 | 85.1% | 36.1% |
| 3989417 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.55 | 40.0 | 3.17e-01 | 85.1% | 34.5% |
| 4280213 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.55 | 39.0 | 3.15e-01 | 85.1% | 34.5% |
| 5048830 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 36.0 | 2.77e-01 | 70.2% | 29.6% |
| 4327532 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.52 | 38.0 | 2.95e-01 | 83.0% | 34.2% |
| 3487873 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.51 | 37.0 | 3.56e-01 | 83.0% | 70.0% |
| 4890564 | 101.1.2.869 ↗ | alpha arrays › HTH › HTH › winged helix domain › IML1_N | 0.51 | 42.0 | 3.65e-01 | 100.0% | 79.0% |