Back to structures

IMGVR_UViG_3300048114_000266-3300048114-Ga0494428_0000022_31954_32196

Arc-Vir

IMGVR_UViG_3300048114_000266-3300048114-Ga0494428_0000022_31954_32196

Quality

63.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-52
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.77 51.0 4.46e-01 72.0% 47.9%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 49.0 3.50e-01 74.0% 24.8%
4zovB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.75 48.0 2.82e-01 70.0% 8.8%
1jmxB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.75 50.0 2.97e-01 96.0% 10.0%
7qs4A01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.70 58.0 3.92e-01 92.0% 44.7%
2fbeA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.69 58.0 3.90e-01 100.0% 25.0%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 49.0 3.57e-01 78.0% 55.6%
1hkfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 49.0 3.86e-01 80.0% 78.7%
7qryB01 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.66 57.0 4.01e-01 100.0% 31.4%
3lqmA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 47.0 3.82e-01 78.0% 87.3%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.65 52.0 3.03e-01 88.0% 10.6%
2r2cB00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 56.0 4.33e-01 98.0% 92.7%
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.64 49.0 3.88e-01 86.0% 76.9%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 46.0 2.75e-01 76.0% 71.6%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 45.0 2.72e-01 74.0% 30.9%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.64 39.0 3.72e-01 74.0% 49.2%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.63 45.0 2.97e-01 76.0% 57.1%
1w9pA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.63 49.0 4.57e-01 100.0% 68.3%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 51.0 3.94e-01 94.0% 75.6%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 43.0 4.48e-01 76.0% 80.4%
1u2kA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.62 50.0 3.77e-01 92.0% 49.2%
6yleA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 53.0 3.12e-01 96.0% 82.1%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 3.78e-01 90.0% 61.1%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 48.0 4.30e-01 100.0% 60.8%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.60 51.0 4.19e-01 100.0% 80.6%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 51.0 4.50e-01 100.0% 65.8%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.06e-01 96.0% 83.1%
4lg9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 2.88e-01 88.0% 78.6%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 51.0 3.19e-01 98.0% 86.3%
1kb0A01 2.140.10.10 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Quinoprotein alcohol dehydrogenase-like superfamily 0.58 51.0 2.86e-01 100.0% 81.0%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 2.90e-01 92.0% 86.4%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.57 50.0 2.97e-01 96.0% 81.6%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 48.0 3.70e-01 98.0% 79.5%
3g9vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 48.0 4.22e-01 98.0% 97.4%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.57 49.0 3.84e-01 100.0% 86.4%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 46.0 3.76e-01 100.0% 82.4%
6y48D01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 2.95e-01 100.0% 44.6%
4ozuA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 2.84e-01 98.0% 15.0%
5muaB01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 48.0 3.47e-01 96.0% 63.5%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.60e-01 100.0% 74.4%
4nsxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 42.0 2.61e-01 92.0% 92.7%
2jx8A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 35.0 3.65e-01 72.0% 72.3%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.54 47.0 3.32e-01 100.0% 79.6%
8djfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 43.0 2.68e-01 88.0% 87.8%
3kljA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.54 35.0 3.16e-01 98.0% 42.2%
6iw6B01 1.10.1410.10 Mainly Alpha › Orthogonal Bundle › Poly(a)-polymerase, middle domain › 0.54 40.0 2.75e-01 88.0% 25.7%
1llnA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.53 42.0 3.09e-01 100.0% 62.9%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 43.0 2.66e-01 96.0% 71.2%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 41.0 2.56e-01 98.0% 17.4%
4jr7A02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 35.0 2.72e-01 72.0% 86.7%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 34.0 3.33e-01 98.0% 62.5%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3438927 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.84 48.0 4.52e-01 72.0% 48.3%
3509731 71.1.1.19 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF25898 0.81 52.0 3.33e-01 76.0% 15.0%
4934826 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.76 44.0 2.70e-01 70.0% 9.8%
3552674 5.1.12.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.73 55.0 3.34e-01 80.0% 72.7%
3769451 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.73 45.0 2.72e-01 72.0% 9.5%
3850704 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.73 54.0 3.27e-01 80.0% 69.2%
3935202 220.1.1.161 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.73 51.0 3.79e-01 74.0% 30.8%
3650233 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 48.0 4.69e-01 70.0% 98.2%
3947081 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.72 45.0 4.18e-01 70.0% 50.0%
4960549 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 48.0 4.89e-01 72.0% 74.0%
3414104 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 48.0 5.23e-01 74.0% 95.0%
3568037 375.1.1.89 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like 0.69 49.0 5.37e-01 74.0% 95.0%
3661622 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.68 43.0 4.73e-01 76.0% 80.0%
3623599 377.1.1.83 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 0.67 42.0 4.70e-01 100.0% 91.4%
4024148 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.66 43.0 4.74e-01 100.0% 97.1%
3580045 375.1.1.217 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26040 0.65 44.0 4.83e-01 72.0% 100.0%
3534694 4050.1.1.2 few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz › F-actin_cap_A 0.63 36.0 3.77e-01 72.0% 57.8%
3928448 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.62 45.0 4.71e-01 88.0% 88.9%
3475065 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 52.0 3.00e-01 94.0% 83.5%
5078768 101.1.2.819 alpha arrays › HTH › HTH › winged helix domain › PF27231 0.61 48.0 3.49e-01 94.0% 74.4%
3643107 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 51.0 2.98e-01 92.0% 84.2%
3876945 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 51.0 3.26e-01 100.0% 34.9%
3618512 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.60 42.0 2.73e-01 76.0% 16.2%
4963768 375.1.1.354 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF28086 0.60 40.0 4.43e-01 74.0% 100.0%
4218238 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.60 48.0 4.42e-01 98.0% 69.2%
3994699 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 44.0 2.78e-01 90.0% 92.6%
3593875 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 41.0 4.08e-01 76.0% 69.1%
3701279 304.107.1.10 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf 0.59 40.0 3.27e-01 72.0% 41.1%
3208203 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.59 40.0 3.92e-01 74.0% 65.5%
3702861 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.59 41.0 4.06e-01 76.0% 69.1%
4827332 109.4.1.41 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Lipoprotein_11 0.59 49.0 3.64e-01 100.0% 83.0%
3500033 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 41.0 4.18e-01 88.0% 78.0%
3823001 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.58 45.0 3.59e-01 90.0% 64.5%
3781083 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 48.0 2.82e-01 100.0% 78.4%
3581452 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 49.0 2.91e-01 96.0% 61.8%
3593071 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 51.0 2.99e-01 100.0% 66.7%
3985807 375.1.1.130 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.57 39.0 4.02e-01 72.0% 82.2%
4077018 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 40.0 2.55e-01 80.0% 13.3%
3405033 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 42.0 2.60e-01 86.0% 76.9%
5006697 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 49.0 2.97e-01 96.0% 88.7%
3347231 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.56 45.0 3.53e-01 100.0% 55.4%
3189994 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.56 42.0 3.53e-01 86.0% 45.6%
3266967 5.1.4.298 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.56 39.0 2.33e-01 78.0% 9.3%
None 0.56 46.0 2.91e-01 100.0% 16.5%
3594377 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 41.0 2.62e-01 88.0% 97.0%
3536338 5.1.3.145 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b, DUF5050 0.54 45.0 2.84e-01 94.0% 86.7%
3505640 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.54 40.0 3.85e-01 86.0% 70.0%
4025894 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 46.0 3.63e-01 100.0% 54.1%
4437258 4.1.1.178 beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.52 43.0 3.37e-01 96.0% 97.4%
4383447 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.51 43.0 2.59e-01 100.0% 25.1%
3204498 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.51 42.0 2.54e-01 98.0% 36.2%
3786775 109.54.1.1 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.51 43.0 2.49e-01 100.0% 9.5%
4678616 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.51 42.0 2.53e-01 98.0% 28.2%
None 0.51 42.0 2.58e-01 100.0% 92.1%