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IMGVR_UViG_3300048114_000266-3300048114-Ga0494428_0000022_36221_37642
Arc-VirIMGVR_UViG_3300048114_000266-3300048114-Ga0494428_0000022_36221_37642
Identity
- Kingdom:
- archaea
Quality
55.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 409-457
D2
medium
residues 30-130_144-162
Domain cluster:
representative
D3
medium
residues 131-143_163-207
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cseI00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.58 | 37.0 | 3.64e-01 | 87.9% | 60.3% |
| 1t2pA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.56 | 48.0 | 3.67e-01 | 100.0% | 80.7% |
| 2gw6A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 43.0 | 3.54e-01 | 87.9% | 48.3% |
| 1dmuA00 | 3.40.600.20 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Restriction endonuclease BglI | 0.55 | 47.0 | 3.06e-01 | 100.0% | 44.8% |
| 4knuA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.55 | 46.0 | 3.43e-01 | 96.6% | 74.8% |
| 1a10I00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.55 | 35.0 | 3.45e-01 | 87.9% | 58.7% |
| 3g5wA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 46.0 | 3.45e-01 | 100.0% | 94.5% |
| 2gzaB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 44.0 | 3.04e-01 | 91.4% | 77.5% |
| 2cuaB00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 47.0 | 3.63e-01 | 98.3% | 50.8% |
| 1v1aA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 41.0 | 2.69e-01 | 87.9% | 33.9% |
| 4ux7A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.54 | 44.0 | 3.16e-01 | 100.0% | 48.0% |
| 4y4qA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.54 | 43.0 | 3.28e-01 | 100.0% | 51.1% |
| 6whjD00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 40.0 | 2.60e-01 | 87.9% | 34.5% |
| 1ikoP00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.52 | 40.0 | 3.18e-01 | 89.7% | 61.0% |
| 5k9aA00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.52 | 42.0 | 2.99e-01 | 98.3% | 44.7% |
| 3w4sA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 39.0 | 2.64e-01 | 89.7% | 32.2% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 40.0 | 3.43e-01 | 89.7% | 53.1% |
| 5c40B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 38.0 | 2.53e-01 | 86.2% | 34.0% |
| 1sgvA02 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.51 | 38.0 | 3.77e-01 | 94.8% | 76.2% |
| 6voxA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.51 | 43.0 | 3.55e-01 | 98.3% | 90.2% |
| 3v42A01 | 3.40.50.12430 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 40.0 | 3.26e-01 | 89.7% | 73.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3252646 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.67 | 58.0 | 4.45e-01 | 100.0% | 50.0% |
| 4932437 | 1.1.9.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF3850 | 0.60 | 53.0 | 4.67e-01 | 100.0% | 78.8% |
| 3203184 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.56 | 44.0 | 3.55e-01 | 89.7% | 45.0% |
| 4280880 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.55 | 43.0 | 4.21e-01 | 98.3% | 78.5% |
| 3248598 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.55 | 45.0 | 2.92e-01 | 91.4% | 23.8% |
| 3217307 | 1.1.9.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF26292 | 0.55 | 46.0 | 3.99e-01 | 94.8% | 80.0% |
| 4256596 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.53 | 46.0 | 3.34e-01 | 100.0% | 37.7% |
| 5041128 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.53 | 41.0 | 3.25e-01 | 87.9% | 77.7% |
| 1514612 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 42.0 | 2.88e-01 | 100.0% | 47.8% |
| 3661085 | 294.1.1.0 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors | 0.52 | 40.0 | 3.79e-01 | 87.9% | 71.2% |
| 3194723 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.52 | 45.0 | 2.82e-01 | 100.0% | 48.7% |
| 3593588 | 7579.1.1.14 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 | 0.52 | 37.0 | 2.43e-01 | 77.6% | 65.7% |
| 4184526 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.52 | 40.0 | 3.24e-01 | 87.9% | 83.3% |
| 1030300 | 2003.6.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like | 0.51 | 39.0 | 2.64e-01 | 89.7% | 32.2% |
| 4124046 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.51 | 40.0 | 2.91e-01 | 91.4% | 29.1% |
| 3481129 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.51 | 43.0 | 3.40e-01 | 94.8% | 97.6% |
| 4073661 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.51 | 42.0 | 3.20e-01 | 100.0% | 39.4% |
| 4557607 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.51 | 41.0 | 3.97e-01 | 94.8% | 81.5% |
| 4175496 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.51 | 38.0 | 3.87e-01 | 94.8% | 82.8% |
| 5044010 | 2484.1.1.136 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutL | 0.51 | 42.0 | 3.01e-01 | 100.0% | 33.3% |
| 4998635 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.50 | 41.0 | 3.30e-01 | 98.3% | 81.5% |