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IMGVR_UViG_3300048599_000489-3300048599-Ga0498940_0007732_16736_17125

Arc-Vir

IMGVR_UViG_3300048599_000489-3300048599-Ga0498940_0007732_16736_17125

Identity

Kingdom:
archaea

Quality

81.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-13_60-129
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.59 33.0 2.90e-01 81.9% 35.2%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.62e-01 94.0% 51.2%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 4.25e-01 94.0% 94.9%
5iu1B00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 39.0 3.59e-01 96.4% 55.4%
1p97A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 44.0 4.02e-01 97.6% 68.4%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.53 31.0 3.60e-01 74.7% 100.0%
2r78C00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 36.0 3.29e-01 94.0% 50.9%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.34e-01 97.6% 47.9%
5egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 40.0 3.25e-01 84.3% 65.3%
3djwA00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 41.0 4.01e-01 90.4% 91.6%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 37.0 2.57e-01 79.5% 91.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2674670 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.62 54.0 4.33e-01 100.0% 77.9%
4960006 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.60 50.0 4.61e-01 94.0% 89.9%
5061581 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.56 41.0 3.84e-01 92.8% 60.0%
5079397 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 39.0 3.96e-01 96.4% 72.9%
3550252 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.53 41.0 3.68e-01 96.4% 59.2%
4100169 223.1.1.155 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PHY, PAS, GAF, PAS_2 0.52 41.0 2.45e-01 97.6% 10.4%
3788782 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.52 38.0 2.42e-01 79.5% 92.6%
4551342 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 3.89e-01 91.6% 78.8%
3574611 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.52 38.0 2.46e-01 79.5% 92.7%
3290046 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 39.0 3.47e-01 94.0% 54.6%
3902105 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 39.0 3.43e-01 92.8% 52.1%
3278050 7579.1.1.24 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LIP 0.50 42.0 2.69e-01 94.0% 82.3%