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IMGVR_UViG_3300048637_000242-3300048637-Ga0496633_0023886_3586_4137

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300048637_000242-3300048637-Ga0496633_0023886_3586_4137 ↗
Kingdom:: archaea

Quality

92.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-93

PDB

Domain cluster: rep: KY022433.1__APD18890.1__X__00085__D6-77

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01326.25 best	PPDK_N	47.9	1.60e-12	68.8%	16.3%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dikA01	3.30.1490.20	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain	0.95	81.0	6.63e-01	92.5%	53.6%
2olsA01	3.30.1490.20	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain	0.83	71.0	5.53e-01	90.3%	76.5%
2uvfA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	34.0	3.20e-01	81.7%	51.7%
1vt0k00	1.10.3230.20	Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4)	0.52	37.0	3.29e-01	75.3%	77.2%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5025235	2002.1.1.105 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEP-utilizers_C	0.99	83.0	4.70e-01	91.4%	10.7%
3598953	206.1.3.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp	0.98	85.0	5.31e-01	90.3%	21.0%
5019790	206.1.3.117 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PEP-utilizers_C	0.98	88.0	5.00e-01	93.5%	11.5%
4430492	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.98	89.0	5.06e-01	93.5%	11.9%
137614	206.1.3.3 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N	0.96	87.0	5.45e-01	94.6%	21.8%
4975876	206.1.3.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp	0.96	81.0	5.13e-01	93.5%	21.9%
5028668	206.1.3.3 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N	0.93	85.0	5.39e-01	94.6%	23.5%

D2 medium residues 94-184

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2k3qA00	1.10.274.70	Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain	0.59	39.0	3.64e-01	71.4%	52.5%
1jyoE00	4.10.1330.10	Few Secondary Structures › Irregular › non globular Virulence effector SptP fold › non globular Virulence effector SptP domain	0.57	33.0	3.25e-01	76.9%	50.0%
4ai4A00	1.10.340.30	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2	0.57	41.0	3.37e-01	76.9%	74.2%
4zfvB01	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.54	44.0	3.49e-01	89.0%	46.0%
1sz2A02	3.40.367.20	Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 ›	0.54	40.0	3.16e-01	80.2%	74.5%
6qj2A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	36.0	2.43e-01	70.3%	19.1%
6vqqA01	1.20.1080.10	Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein.	0.53	43.0	3.10e-01	89.0%	72.9%
2wxfA02	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.53	27.0	2.52e-01	95.6%	38.7%
2i53A02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.52	38.0	3.66e-01	80.2%	86.5%
4jkzA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	42.0	3.40e-01	89.0%	72.1%

ECOD (24)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4991809	206.1.3.3 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N	0.95	80.0	4.99e-01	100.0%	19.5%
5028668	206.1.3.3 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N	0.95	80.0	5.07e-01	100.0%	21.3%
4975876	206.1.3.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp	0.94	80.0	5.06e-01	100.0%	21.6%
5025235	2002.1.1.105 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEP-utilizers_C	0.94	79.0	4.52e-01	100.0%	10.7%
4430492	2002.1.1.0 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels	0.94	79.0	4.52e-01	100.0%	11.0%
3598953	206.1.3.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp	0.89	76.0	4.78e-01	100.0%	20.5%
3873279	5001.1.1.5 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3	0.61	53.0	3.84e-01	100.0%	47.5%
4934384	101.1.2.947 ↗	alpha arrays › HTH › HTH › winged helix domain › PF27234	0.59	41.0	4.24e-01	71.4%	85.9%
5001308	871.1.1.1 ↗	a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3	0.57	51.0	3.75e-01	100.0%	69.2%
3725161	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.57	41.0	3.82e-01	100.0%	60.0%
4002070	11.1.1.102 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD	0.56	35.0	2.33e-01	74.7%	16.3%
3947810	3813.1.1.1 ↗	alpha bundles › DUF416 › DUF416 › DUF416 › DUF416	0.55	49.0	3.86e-01	98.9%	53.3%
4905	4963.1.1.2 ↗	alpha complex topology › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › RdRP_5	0.53	44.0	3.02e-01	96.7%	60.9%
3266903	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.53	37.0	3.46e-01	71.4%	94.5%
3723087	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	43.0	2.93e-01	92.3%	53.9%
4469857	3747.1.1.2 ↗	a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C	0.52	35.0	3.27e-01	86.8%	55.7%
4962835	2004.1.1.42 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE	0.52	40.0	2.50e-01	81.3%	71.1%
4311385	101.1.2.553 ↗	alpha arrays › HTH › HTH › winged helix domain › FlgI	0.51	31.0	3.37e-01	94.5%	71.8%
3560901	601.19.1.20 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3	0.51	34.0	3.71e-01	70.3%	96.0%
4001707	284.1.3.0 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain	0.51	35.0	3.65e-01	71.4%	82.4%
3710894	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.51	24.0	3.03e-01	95.6%	72.4%
167906	4321.1.1.2 ↗	a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › DUF3298,PdaC	0.51	39.0	2.97e-01	82.4%	73.5%
3857887	5094.1.1.11 ↗	a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3	0.50	34.0	3.68e-01	70.3%	96.0%
5056521	7523.1.1.0 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II	0.50	37.0	3.46e-01	76.9%	90.9%