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IMGVR_UViG_3300049271_000009-3300049271-Ga0497537_001929_1843_2181

Arc-Vir

IMGVR_UViG_3300049271_000009-3300049271-Ga0497537_001929_1843_2181

Identity

Kingdom:
archaea

Quality

84.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-108
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.61 50.0 3.64e-01 91.4% 72.8%
3we5A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 46.0 3.81e-01 80.2% 68.1%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.59 50.0 3.97e-01 96.3% 74.6%
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 42.0 3.09e-01 74.1% 68.9%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.58 44.0 4.03e-01 82.7% 85.3%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 45.0 3.52e-01 85.2% 53.2%
3i9v700 3.30.920.80 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 0.57 43.0 3.77e-01 82.7% 80.3%
3o9pA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 43.0 3.43e-01 82.7% 79.3%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 3.44e-01 77.8% 88.4%
3zs6A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 43.0 3.43e-01 82.7% 80.8%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 41.0 3.26e-01 77.8% 81.8%
1xocA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 42.0 3.45e-01 81.5% 80.6%
1xn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 45.0 3.82e-01 88.9% 76.8%
2kmsA02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.55 33.0 3.79e-01 79.0% 84.5%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.55 45.0 3.33e-01 93.8% 81.1%
1rwhA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.53 38.0 3.42e-01 76.5% 60.5%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.52 39.0 3.16e-01 80.2% 52.2%
2yadA00 3.30.390.150 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 32.0 3.31e-01 74.1% 63.6%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.52 41.0 3.61e-01 90.1% 57.9%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 4.18e-01 91.4% 95.4%
3ihpA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 44.0 4.02e-01 100.0% 92.2%
2qg7B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 35.0 3.28e-01 71.6% 87.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4928595 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.75 60.0 5.44e-01 87.7% 64.8%
3471039 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 42.0 3.12e-01 72.8% 88.4%
3960559 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 46.0 4.05e-01 85.2% 94.3%
4155766 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.59 40.0 2.76e-01 70.4% 79.3%
3590828 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 40.0 3.66e-01 71.6% 96.4%
3871129 6129.1.1.9 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › RGM_C 0.59 42.0 3.24e-01 76.5% 50.8%
3847935 6129.1.1.9 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › RGM_C 0.58 41.0 3.22e-01 76.5% 51.1%
4115428 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.58 43.0 3.37e-01 80.2% 58.9%
3968296 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 42.0 2.78e-01 77.8% 97.5%
3877146 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 41.0 3.06e-01 75.3% 70.0%
4361685 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.57 41.0 3.24e-01 77.8% 85.7%
5024335 7520.1.1.2 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › HcgF 0.55 42.0 3.34e-01 82.7% 81.7%
4955729 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 41.0 3.28e-01 81.5% 65.9%
4806694 1033.1.1.3 ↗ beta duplicates or obligate multimers › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › TcdA_TcdB_pore, PF30720 0.55 37.0 2.84e-01 71.6% 48.9%
3222547 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.55 40.0 2.89e-01 80.2% 61.2%
3574666 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.54 33.0 4.03e-01 74.1% 100.0%
4992030 632.1.1.40 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › DUF3536 0.54 37.0 2.79e-01 71.6% 29.8%
3200361 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.53 38.0 3.07e-01 74.1% 81.3%
4015358 7579.1.1.49 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › GCE_fung 0.53 45.0 3.01e-01 97.5% 33.5%
3906040 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.52 41.0 3.24e-01 85.2% 60.6%
3986751 3197.1.1.0 ↗ a+b two layers › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 › N-terminal domain of effector protein PipB2 0.52 46.0 4.17e-01 100.0% 87.3%
4662143 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 38.0 2.81e-01 79.0% 61.8%
3606615 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.52 39.0 3.78e-01 81.5% 78.9%
3730029 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.51 44.0 3.35e-01 98.8% 62.7%
3684934 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 44.0 3.32e-01 100.0% 62.9%
4937227 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.50 41.0 3.13e-01 95.1% 100.0%