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IMGVR_UViG_3300049638_000725-3300049638-Ga0499516_019294_147_863
Arc-VirIMGVR_UViG_3300049638_000725-3300049638-Ga0499516_019294_147_863
Identity
- Kingdom:
- archaea
Quality
89.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-55
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3puaA01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.79 | 54.0 | 3.30e-01 | 72.0% | 15.4% |
| 1mhnA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 42.0 | 4.03e-01 | 94.0% | 52.5% |
| 4bwxA03 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 45.0 | 3.93e-01 | 74.0% | 48.8% |
| 1pnjA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 47.0 | 3.98e-01 | 88.0% | 47.7% |
| 4o62A00 | 3.30.40.100 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.63 | 44.0 | 4.24e-01 | 72.0% | 83.9% |
| 4xr7F02 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 44.0 | 3.65e-01 | 76.0% | 46.7% |
| 2ypdB01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.61 | 42.0 | 2.57e-01 | 70.0% | 13.5% |
| 1hyoA01 | 2.30.30.230 | Mainly Beta › Roll › SH3 type barrels. › Fumarylacetoacetase, N-terminal domain | 0.61 | 41.0 | 3.22e-01 | 70.0% | 91.2% |
| 1uxyA03 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.60 | 48.0 | 3.55e-01 | 94.0% | 60.0% |
| 5jzxD02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.59 | 48.0 | 3.54e-01 | 94.0% | 64.4% |
| 3pvlA05 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 40.0 | 3.52e-01 | 72.0% | 57.9% |
| 2lwyA00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.57 | 47.0 | 3.44e-01 | 92.0% | 84.1% |
| 8gq6C01 | 3.30.230.130 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Cullin; Chain C, Domain 2 | 0.57 | 47.0 | 3.43e-01 | 100.0% | 84.9% |
| 1bccD02 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.56 | 40.0 | 2.79e-01 | 78.0% | 28.6% |
| 5xfoA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 39.0 | 3.82e-01 | 94.0% | 67.9% |
| 2i4lB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.55 | 43.0 | 3.52e-01 | 90.0% | 86.1% |
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.55 | 43.0 | 3.23e-01 | 92.0% | 84.4% |
| 5oomK00 | 3.90.1180.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 | 0.54 | 36.0 | 2.52e-01 | 70.0% | 42.4% |
| 2m85A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 38.0 | 3.54e-01 | 100.0% | 56.9% |
| 1l1lA01 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.54 | 36.0 | 2.13e-01 | 70.0% | 24.9% |
| 4qflA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.54 | 39.0 | 2.84e-01 | 82.0% | 69.6% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.54 | 40.0 | 3.38e-01 | 88.0% | 88.0% |
| 1fvuB00 | 3.10.100.10 | Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A | 0.54 | 37.0 | 2.83e-01 | 74.0% | 76.9% |
| 3weeB03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.54 | 35.0 | 2.75e-01 | 84.0% | 28.7% |
| 1httA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.53 | 44.0 | 3.60e-01 | 94.0% | 89.8% |
| 1vw4H00 | 3.90.1180.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L13p; Chain: A; › Ribosomal protein L13 | 0.51 | 37.0 | 2.83e-01 | 84.0% | 61.5% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.51 | 37.0 | 3.36e-01 | 88.0% | 89.0% |
| 4ljiB00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.51 | 35.0 | 2.70e-01 | 76.0% | 84.7% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3994540 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.77 | 53.0 | 3.21e-01 | 72.0% | 14.5% |
| 3764092 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.76 | 52.0 | 3.21e-01 | 72.0% | 15.4% |
| 3596234 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 49.0 | 5.33e-01 | 74.0% | 82.5% |
| 3833034 | 10.12.1.9 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC | 0.75 | 51.0 | 2.90e-01 | 70.0% | 12.3% |
| 4286118 | 10.12.1.9 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC | 0.75 | 51.0 | 3.10e-01 | 72.0% | 15.9% |
| 4883095 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.73 | 42.0 | 4.79e-01 | 84.0% | 100.0% |
| 4616082 | 4236.1.1.0 ↗ | few secondary structure elements › Sec-C motif › Sec-C motif › Sec-C motif | 0.72 | 50.0 | 5.48e-01 | 76.0% | 92.5% |
| 3680858 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.70 | 48.0 | 3.39e-01 | 74.0% | 44.8% |
| 3598807 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 58.0 | 5.25e-01 | 100.0% | 69.6% |
| 3712524 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.68 | 56.0 | 5.52e-01 | 100.0% | 87.3% |
| 3605531 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.67 | 57.0 | 4.92e-01 | 100.0% | 59.5% |
| 3592370 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.67 | 58.0 | 4.44e-01 | 100.0% | 41.7% |
| 3514631 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.65 | 46.0 | 3.47e-01 | 74.0% | 31.5% |
| 5071572 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 42.0 | 3.91e-01 | 70.0% | 50.8% |
| 2321219 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.64 | 46.0 | 3.34e-01 | 76.0% | 29.9% |
| 4778018 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.64 | 46.0 | 3.90e-01 | 76.0% | 51.2% |
| 3739884 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.64 | 45.0 | 3.34e-01 | 74.0% | 30.2% |
| 2321841 | 1016.1.1.1 ↗ | alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK | 0.62 | 43.0 | 3.14e-01 | 74.0% | 28.2% |
| 4011699 | 4224.1.1.0 ↗ | few secondary structure elements › CHY zinc finger › CHY zinc finger › CHY zinc finger | 0.62 | 40.0 | 3.88e-01 | 100.0% | 56.7% |
| 4562754 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.61 | 49.0 | 3.96e-01 | 90.0% | 95.0% |
| 3318371 | 4.11.1.4 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › RuBisCo_chap_C | 0.60 | 47.0 | 3.28e-01 | 86.0% | 45.6% |
| 3254029 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.57 | 37.0 | 3.11e-01 | 100.0% | 35.8% |
| 4320945 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.56 | 39.0 | 2.80e-01 | 74.0% | 82.5% |
| 1145958 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.54 | 35.0 | 2.47e-01 | 84.0% | 18.8% |
| 4969220 | 4013.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › Queuosine_synth | 0.53 | 42.0 | 2.76e-01 | 90.0% | 83.0% |
| 5028727 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.53 | 33.0 | 2.22e-01 | 70.0% | 12.9% |
| 3782250 | 2004.1.1.230 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tsr1_G-like | 0.52 | 37.0 | 2.37e-01 | 74.0% | 61.8% |
| 4420173 | 4.1.1.43 ↗ | beta barrels › SH3 › SH3 › SH3 › SMN_Tudor | 0.52 | 42.0 | 3.72e-01 | 92.0% | 61.3% |
| 4077203 | 107.1.1.10 ↗ | alpha arrays › Cytochrome c-like › Cytochrome c › Cytochrome c › Cytochrom_C550 | 0.51 | 36.0 | 2.72e-01 | 76.0% | 80.7% |
| 3208633 | 2004.1.1.768 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_12, AAA_19 | 0.51 | 43.0 | 2.39e-01 | 100.0% | 7.8% |
| 3995122 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 36.0 | 2.36e-01 | 76.0% | 30.7% |
| 5053160 | 3740.1.1.3 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N | 0.51 | 35.0 | 2.45e-01 | 76.0% | 21.0% |
D2
high
residues 65-122
Domain cluster:
rep: MW824372.1__QZI86969.1__MYOV056v2_p0196__00195__D5-73
D3
high
residues 146-236
Domain cluster:
rep: IMGVR_UViG_3300010332_000127-3300010332-Ga0116200_100039035__D12-102
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13391.13 best | HNH_2 | 28.6 | 1.50e-06 | 51.6% | 91.0% |
| PF01844.30 | HNH | 39.1 | 9.20e-10 | 50.5% | 97.9% |