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IMGVR_UViG_3300049640_000442-3300049640-Ga0499518_007490_1068_1634
Arc-VirIMGVR_UViG_3300049640_000442-3300049640-Ga0499518_007490_1068_1634
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-80
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2opiA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.64 | 53.0 | 3.98e-01 | 92.5% | 83.7% |
| 2fkcA01 | 3.40.1350.40 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.63 | 56.0 | 4.98e-01 | 96.2% | 70.0% |
| 1jdiA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.62 | 51.0 | 3.77e-01 | 92.5% | 82.1% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.62 | 42.0 | 4.30e-01 | 87.5% | 72.2% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 41.0 | 4.14e-01 | 76.2% | 67.5% |
| 5aykA07 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 45.0 | 4.03e-01 | 95.0% | 56.5% |
| 1ah5A03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.60 | 40.0 | 4.01e-01 | 87.5% | 65.1% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.59 | 41.0 | 3.24e-01 | 72.5% | 78.6% |
| 3dbaA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 44.0 | 3.56e-01 | 88.7% | 84.8% |
| 4g3vA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 44.0 | 3.58e-01 | 87.5% | 80.2% |
| 2qybA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 45.0 | 3.75e-01 | 91.3% | 95.4% |
| 4hpmD00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 40.0 | 3.97e-01 | 75.0% | 98.8% |
| 7lscA01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.55 | 45.0 | 3.77e-01 | 92.5% | 94.0% |
| 3dcxA00 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.54 | 31.0 | 2.78e-01 | 80.0% | 35.9% |
| 4a17O01 | 1.10.1650.10 | Mainly Alpha › Orthogonal Bundle › 50s Ribosomal Protein L19e, Chain O, domain 1 › | 0.52 | 35.0 | 4.08e-01 | 71.2% | 98.2% |
| 3llcA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 39.0 | 2.79e-01 | 82.5% | 84.3% |
| 4iuhA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 40.0 | 3.35e-01 | 86.3% | 97.2% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.51 | 40.0 | 3.23e-01 | 87.5% | 84.8% |
| 2z04B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 34.0 | 2.64e-01 | 85.0% | 29.6% |
| 3ix3A00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.50 | 40.0 | 3.28e-01 | 90.0% | 89.0% |
| 3o27B00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.50 | 31.0 | 3.41e-01 | 78.8% | 84.2% |
| 2i06A01 | 3.50.14.10 | Alpha Beta › 3-Layer(bba) Sandwich › Replication Terminator Protein (Tus); Chain A, domain 1 › Replication terminator Tus, domain 1 superfamily/Replication terminator Tus | 0.50 | 44.0 | 3.24e-01 | 97.5% | 90.2% |
| 3cebA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.50 | 37.0 | 3.65e-01 | 95.0% | 75.3% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4972498 | 304.103.1.0 ↗ | a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like | 0.62 | 43.0 | 3.06e-01 | 72.5% | 58.0% |
| 5011625 | 2008.1.1.57 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VirArc_Nuclease | 0.58 | 48.0 | 3.69e-01 | 93.8% | 41.0% |
| 2753438 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.56 | 44.0 | 3.70e-01 | 86.3% | 94.4% |
| 4964831 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.56 | 41.0 | 3.14e-01 | 76.2% | 78.9% |
| 4003849 | 6111.1.1.1 ↗ | a+b complex topology › C-terminal domain of cytoplasmic dynein heavy chain › C-terminal domain of cytoplasmic dynein heavy chain › C-terminal domain of cytoplasmic dynein heavy chain › Dynein_C | 0.56 | 46.0 | 3.14e-01 | 91.3% | 39.0% |
| 3787273 | 2485.1.1.20 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glrx-like | 0.56 | 41.0 | 4.14e-01 | 93.8% | 80.8% |
| 3781087 | 219.1.1.111 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 | 0.56 | 39.0 | 2.54e-01 | 72.5% | 20.8% |
| 4951095 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.56 | 43.0 | 3.51e-01 | 87.5% | 77.6% |
| 1886120 | 221.1.1.55 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RAWUL | 0.56 | 40.0 | 3.93e-01 | 76.2% | 89.8% |
| 3816040 | 223.1.1.28 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N | 0.55 | 46.0 | 3.65e-01 | 95.0% | 96.6% |
| 3666890 | 223.1.1.28 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N | 0.55 | 46.0 | 3.49e-01 | 96.2% | 95.7% |
| 4939836 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.55 | 44.0 | 3.41e-01 | 91.3% | 72.8% |
| 3285512 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.54 | 44.0 | 3.64e-01 | 92.5% | 87.1% |
| 3733413 | 3343.1.1.1 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal | 0.54 | 44.0 | 2.63e-01 | 93.8% | 16.8% |
| 3818851 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.54 | 45.0 | 2.72e-01 | 98.8% | 46.0% |
| 4968253 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 42.0 | 3.38e-01 | 91.3% | 78.3% |
| 3321355 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 35.0 | 3.71e-01 | 88.7% | 77.1% |
| 3438711 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.53 | 38.0 | 3.69e-01 | 76.2% | 67.8% |
| 5004725 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.52 | 40.0 | 3.68e-01 | 82.5% | 92.4% |
| 4192947 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.52 | 40.0 | 3.19e-01 | 82.5% | 79.4% |
| 1271873 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.52 | 40.0 | 3.11e-01 | 86.3% | 78.3% |
| 3968497 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.52 | 40.0 | 3.18e-01 | 87.5% | 73.0% |
| 4951932 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.52 | 37.0 | 2.58e-01 | 77.5% | 45.7% |
| 4976465 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.51 | 42.0 | 2.72e-01 | 93.8% | 76.7% |
| 3292376 | 223.1.1.28 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N | 0.51 | 39.0 | 3.10e-01 | 86.3% | 94.1% |
| 3741246 | 3343.1.1.1 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal | 0.51 | 42.0 | 2.57e-01 | 93.8% | 16.2% |
| 3390004 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.50 | 35.0 | 3.18e-01 | 72.5% | 67.3% |
| 3473930 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 41.0 | 3.59e-01 | 91.3% | 84.8% |
D2
medium
residues 81-188
Domain cluster:
rep: IMGVR_UViG_3300037809_000264-3300037809-Ga0427884_001405_828_1355__D68-175
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w8mA00 | 3.40.1350.50 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › D212 PD-(D/E)XK nuclease, catalytic motif | 0.62 | 46.0 | 3.99e-01 | 94.4% | 50.9% |
| 3jzyA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.58 | 42.0 | 4.09e-01 | 99.1% | 66.1% |
| 2wbmA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 29.0 | 3.41e-01 | 82.4% | 68.6% |
| 2dchX01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 36.0 | 3.83e-01 | 96.3% | 75.3% |
| 4rr5A02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.55 | 26.0 | 3.28e-01 | 81.5% | 73.4% |
| 4rcjA01 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.54 | 43.0 | 3.94e-01 | 97.2% | 63.7% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 30.0 | 2.95e-01 | 78.7% | 47.5% |
| 5f7qC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 28.0 | 3.33e-01 | 74.1% | 74.3% |
| 2yweA04 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 28.0 | 2.82e-01 | 84.3% | 45.6% |
| 5dnoA00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.52 | 46.0 | 4.04e-01 | 100.0% | 83.5% |
| 2j0wA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.52 | 32.0 | 3.54e-01 | 91.7% | 80.2% |
| 4rcmB00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.51 | 45.0 | 4.02e-01 | 100.0% | 90.6% |
| 3mahA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 29.0 | 3.32e-01 | 91.7% | 81.4% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3704078 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.58 | 29.0 | 3.15e-01 | 82.4% | 54.4% |
| 4427431 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.57 | 29.0 | 3.33e-01 | 82.4% | 65.3% |
| 1159603 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.56 | 36.0 | 4.02e-01 | 96.3% | 86.4% |
| 4191626 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.56 | 28.0 | 3.17e-01 | 82.4% | 60.0% |
| 3279780 | 2008.1.1.20 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 | 0.55 | 39.0 | 3.20e-01 | 100.0% | 38.9% |
| 3701334 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.54 | 28.0 | 2.92e-01 | 82.4% | 50.5% |
| 4947074 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.54 | 27.0 | 3.22e-01 | 83.3% | 70.0% |
| 4975508 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.54 | 28.0 | 2.83e-01 | 84.3% | 44.7% |
| 4983133 | 304.24.1.6 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SBDS_C | 0.54 | 27.0 | 3.21e-01 | 83.3% | 71.0% |
| 4165721 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.53 | 29.0 | 3.46e-01 | 80.6% | 80.0% |
| 4956901 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.52 | 30.0 | 3.27e-01 | 82.4% | 68.2% |
| 138898 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.52 | 26.0 | 3.24e-01 | 81.5% | 81.4% |
| 3363680 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.52 | 37.0 | 3.71e-01 | 95.4% | 72.7% |
| 3672078 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.52 | 29.0 | 3.33e-01 | 82.4% | 76.0% |
| 3726519 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.51 | 29.0 | 3.28e-01 | 82.4% | 72.5% |
| 4358940 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.51 | 29.0 | 3.20e-01 | 82.4% | 68.2% |
| 5039110 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.51 | 29.0 | 3.32e-01 | 82.4% | 77.3% |
| 4931198 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.51 | 29.0 | 3.11e-01 | 82.4% | 64.4% |
| 5264 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.51 | 29.0 | 3.27e-01 | 83.3% | 76.0% |
| 5050934 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.50 | 28.0 | 3.37e-01 | 82.4% | 87.7% |
| 5010510 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.50 | 28.0 | 3.19e-01 | 82.4% | 72.5% |
| 4044395 | 304.8.1.21 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 | 0.50 | 29.0 | 3.14e-01 | 82.4% | 68.2% |