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IMGVR_UViG_3300049640_000547-3300049640-Ga0499518_015743_2332_2544
Arc-VirIMGVR_UViG_3300049640_000547-3300049640-Ga0499518_015743_2332_2544
Identity
- Kingdom:
- archaea
Quality
92.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-69
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2mzwA01 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.72 | 42.0 | 3.70e-01 | 90.6% | 39.5% |
| 7uvpA02 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.71 | 41.0 | 3.79e-01 | 90.6% | 43.5% |
| 1i9gA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.71 | 53.0 | 3.68e-01 | 83.0% | 80.4% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.66 | 48.0 | 4.39e-01 | 83.0% | 57.7% |
| 4durB01 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.61 | 51.0 | 4.51e-01 | 100.0% | 63.0% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 45.0 | 3.85e-01 | 83.0% | 47.8% |
| 2pn1A02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.60 | 42.0 | 4.03e-01 | 88.7% | 64.1% |
| 1whrA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.60 | 41.0 | 3.20e-01 | 83.0% | 30.6% |
| 3vx8A01 | 3.40.140.100 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain | 0.60 | 47.0 | 3.52e-01 | 88.7% | 36.2% |
| 2wbmA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 40.0 | 3.75e-01 | 83.0% | 54.3% |
| 1rkiA01 | 3.30.70.1650 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › PDO, CxxC motif | 0.59 | 51.0 | 4.24e-01 | 100.0% | 88.7% |
| 3jb9a02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 40.0 | 3.82e-01 | 84.9% | 60.3% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.58 | 43.0 | 3.33e-01 | 83.0% | 46.9% |
| 1kn6A00 | 3.30.70.850 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8, pro-domain | 0.58 | 38.0 | 3.57e-01 | 83.0% | 50.7% |
| 1nh8A03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 39.0 | 3.75e-01 | 83.0% | 58.2% |
| 2bbeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 41.0 | 3.51e-01 | 83.0% | 49.5% |
| 3cypB00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.57 | 45.0 | 3.52e-01 | 86.8% | 84.5% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.57 | 46.0 | 4.18e-01 | 90.6% | 93.2% |
| 2diuA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 39.0 | 3.61e-01 | 84.9% | 53.4% |
| 3wx4A00 | 3.30.70.2770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 43.0 | 3.64e-01 | 84.9% | 54.1% |
| 7qh2C03 | 3.30.70.2740 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 41.0 | 3.71e-01 | 84.9% | 55.1% |
| 2dt9A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 42.0 | 3.76e-01 | 83.0% | 60.8% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 41.0 | 3.66e-01 | 83.0% | 52.4% |
| 4g9yA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 43.0 | 3.17e-01 | 83.0% | 36.0% |
| 1ka8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 40.0 | 3.30e-01 | 77.4% | 79.0% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 40.0 | 3.69e-01 | 84.9% | 57.0% |
| 5jbrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 3.58e-01 | 83.0% | 91.9% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 42.0 | 3.72e-01 | 92.5% | 91.1% |
| 7arcC01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.54 | 45.0 | 3.51e-01 | 100.0% | 73.3% |
| 2bj3D02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.54 | 38.0 | 3.50e-01 | 83.0% | 53.1% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 38.0 | 3.36e-01 | 84.9% | 52.0% |
| 1wycA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 43.0 | 2.86e-01 | 92.5% | 70.7% |
| 3lpxB02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 38.0 | 3.33e-01 | 83.0% | 58.5% |
| 1p4xA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 40.0 | 3.03e-01 | 83.0% | 39.4% |
| 5xnsC00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.52 | 40.0 | 3.66e-01 | 83.0% | 77.1% |
| 4e9jB01 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.52 | 38.0 | 2.95e-01 | 83.0% | 58.0% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 39.0 | 3.14e-01 | 83.0% | 54.3% |
| 3vlaA02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.51 | 39.0 | 2.64e-01 | 83.0% | 37.8% |
| 2b0lC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 39.0 | 3.28e-01 | 84.9% | 54.3% |
| 4qmfB01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.50 | 36.0 | 3.27e-01 | 83.0% | 52.4% |
| 2nzcB00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.50 | 39.0 | 3.48e-01 | 98.1% | 56.8% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4943445 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.73 | 46.0 | 4.14e-01 | 73.6% | 45.3% |
| 1405791 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.72 | 51.0 | 4.82e-01 | 83.0% | 62.5% |
| 3738385 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.72 | 43.0 | 3.70e-01 | 96.2% | 37.6% |
| 5000359 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.68 | 46.0 | 4.14e-01 | 71.7% | 52.0% |
| 4995922 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.68 | 45.0 | 4.04e-01 | 71.7% | 49.3% |
| 3930315 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.64 | 54.0 | 4.74e-01 | 100.0% | 67.1% |
| 3456703 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.63 | 47.0 | 4.94e-01 | 86.8% | 97.8% |
| 5013990 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 45.0 | 3.53e-01 | 77.4% | 65.8% |
| 3793353 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.62 | 53.0 | 4.53e-01 | 100.0% | 73.3% |
| 3195256 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.62 | 45.0 | 3.92e-01 | 84.9% | 49.4% |
| 3800169 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.62 | 54.0 | 4.50e-01 | 100.0% | 61.1% |
| 4097357 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.62 | 46.0 | 3.04e-01 | 84.9% | 41.2% |
| 4390118 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.60 | 47.0 | 3.31e-01 | 86.8% | 55.1% |
| 3745161 | 4323.1.1.2 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V-ATPase_C | 0.60 | 44.0 | 3.70e-01 | 83.0% | 44.0% |
| 3893846 | 304.5.1.25 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › V-ATPase_C | 0.60 | 44.0 | 3.63e-01 | 83.0% | 41.9% |
| 4207299 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.59 | 44.0 | 4.00e-01 | 83.0% | 58.7% |
| 1759952 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.59 | 43.0 | 3.67e-01 | 84.9% | 45.1% |
| 3238441 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.59 | 50.0 | 4.31e-01 | 100.0% | 63.3% |
| 3218868 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.58 | 50.0 | 4.24e-01 | 100.0% | 67.4% |
| 3402524 | 101.1.2.186 ↗ | alpha arrays › HTH › HTH › winged helix domain › ASH2L-like_WH | 0.58 | 43.0 | 3.54e-01 | 79.2% | 86.3% |
| 4119221 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.58 | 42.0 | 4.03e-01 | 83.0% | 64.6% |
| 3974037 | 327.16.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N | 0.58 | 42.0 | 3.82e-01 | 83.0% | 56.0% |
| 3515912 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.57 | 48.0 | 4.15e-01 | 100.0% | 63.3% |
| 3441807 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.56 | 39.0 | 3.45e-01 | 75.5% | 81.2% |
| 4972222 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 3.43e-01 | 81.1% | 51.0% |
| 139586 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 41.0 | 3.67e-01 | 83.0% | 53.0% |
| 5013384 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.56 | 43.0 | 3.08e-01 | 83.0% | 52.0% |
| 3194355 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.56 | 42.0 | 2.38e-01 | 81.1% | 10.7% |
| 5075417 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.55 | 42.0 | 3.35e-01 | 83.0% | 40.0% |
| 4588083 | 327.16.1.15 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N_2 | 0.55 | 38.0 | 3.69e-01 | 84.9% | 63.1% |
| 1291586 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.54 | 42.0 | 3.06e-01 | 83.0% | 35.3% |
| 4580985 | 101.1.2.603 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 | 0.54 | 42.0 | 2.51e-01 | 83.0% | 20.3% |
| 5036720 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.54 | 41.0 | 3.52e-01 | 81.1% | 63.1% |
| 4980612 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.54 | 39.0 | 3.59e-01 | 83.0% | 55.0% |
| 3813495 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 43.0 | 3.61e-01 | 100.0% | 80.9% |
| 4373972 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.54 | 40.0 | 3.26e-01 | 81.1% | 79.8% |
| 4443506 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.53 | 41.0 | 2.43e-01 | 83.0% | 13.4% |
| 3319155 | 101.1.4.12 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC | 0.53 | 39.0 | 2.55e-01 | 83.0% | 26.4% |
| 4022697 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.53 | 38.0 | 3.42e-01 | 83.0% | 51.8% |
| 3832428 | 109.4.1.585 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF627 | 0.53 | 37.0 | 2.22e-01 | 75.5% | 17.5% |
| 5035546 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.38e-01 | 81.1% | 65.9% |
| 4232356 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.52 | 42.0 | 2.41e-01 | 86.8% | 11.1% |
| 3265476 | 304.9.1.40 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › BRAP2 | 0.52 | 43.0 | 3.53e-01 | 100.0% | 99.1% |
| 3895824 | 327.11.2.39 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_3 | 0.52 | 36.0 | 3.58e-01 | 83.0% | 68.3% |
| 3172922 | 304.9.1.161 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF30126 | 0.52 | 42.0 | 3.68e-01 | 100.0% | 91.1% |
| 3781172 | 101.1.2.517 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD | 0.51 | 40.0 | 2.46e-01 | 100.0% | 12.3% |
| 4991692 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.52e-01 | 83.0% | 63.8% |
| 3981136 | 237.1.1.0 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation | 0.50 | 42.0 | 3.06e-01 | 100.0% | 74.7% |
| 4945701 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 37.0 | 3.25e-01 | 83.0% | 65.9% |
| 3407163 | 304.48.1.6 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_A | 0.50 | 40.0 | 3.25e-01 | 96.2% | 89.9% |