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IMGVR_UViG_3300049641_000622-3300049641-Ga0499519_014516_3_962
Arc-VirIMGVR_UViG_3300049641_000622-3300049641-Ga0499519_014516_3_962
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-83_180-253
Domain cluster:
rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13245.13 best | AAA_19 | 41.5 | 2.10e-10 | 89.7% | 88.8% |
| PF13604.13 | AAA_30 | 27.2 | 4.20e-06 | 86.5% | 55.0% |
| PF00580.28 | UvrD-helicase | 28.6 | 1.60e-06 | 57.7% | 29.1% |
| PF00580.28 | UvrD-helicase | 26.3 | 8.30e-06 | 38.5% | 18.1% |
D2
high
residues 95-172
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cobA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 40.0 | 5.02e-01 | 76.9% | 95.5% |
| 4izzB02 | 1.10.10.1680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain | 0.67 | 44.0 | 4.63e-01 | 88.5% | 76.5% |
| 1x4qA01 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.61 | 45.0 | 4.67e-01 | 100.0% | 85.9% |
| 2eljA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 43.0 | 4.35e-01 | 96.2% | 88.0% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 38.0 | 4.09e-01 | 91.0% | 82.1% |
| 1ci4A00 | 1.10.150.40 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Barrier-to-autointegration factor, BAF | 0.55 | 43.0 | 4.15e-01 | 84.6% | 93.2% |
| 3l5kA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 40.0 | 4.19e-01 | 100.0% | 88.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4951677 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 43.0 | 4.91e-01 | 83.3% | 94.5% |
| 3664902 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.63 | 51.0 | 4.69e-01 | 100.0% | 68.0% |
| 5034899 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.57 | 50.0 | 3.63e-01 | 98.7% | 52.1% |
| 4357827 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.53 | 36.0 | 3.76e-01 | 82.1% | 78.3% |
D3
medium
residues 256-306
Domain cluster:
representative