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IMGVR_UViG_3300049807_000146-3300049807-Ga0499919_004134_1_201

Arc-Vir

IMGVR_UViG_3300049807_000146-3300049807-Ga0499919_004134_1_201

Quality

91.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-61
PDB
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.81 71.0 5.79e-01 100.0% 53.7%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 59.0 4.09e-01 100.0% 25.6%
6ku8A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 59.0 5.45e-01 100.0% 66.7%
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 58.0 5.32e-01 100.0% 66.7%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.73 64.0 4.40e-01 100.0% 54.7%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.73 63.0 4.80e-01 100.0% 81.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 50.0 4.39e-01 84.6% 50.7%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.71 63.0 4.41e-01 100.0% 31.9%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.71 61.0 5.11e-01 100.0% 57.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 4.92e-01 88.5% 66.1%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.70 61.0 4.68e-01 100.0% 81.1%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.70 60.0 4.30e-01 100.0% 45.1%
1p97A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.68 58.0 4.58e-01 100.0% 86.8%
2f91A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 60.0 4.69e-01 100.0% 58.4%
4dk0A02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.68 59.0 4.96e-01 100.0% 63.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 45.0 4.20e-01 80.8% 55.4%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 57.0 5.14e-01 94.2% 72.2%
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.67 52.0 3.75e-01 90.4% 28.3%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 4.15e-01 90.4% 43.6%
1y12B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.66 55.0 4.04e-01 100.0% 46.8%
3c8cB02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 54.0 4.33e-01 98.1% 69.9%
7w0aA02 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.65 51.0 3.91e-01 88.5% 59.2%
2j3vA02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.65 56.0 3.78e-01 100.0% 60.4%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 48.0 4.99e-01 100.0% 89.6%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 3.91e-01 84.6% 43.5%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.64 45.0 4.48e-01 76.9% 71.4%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 4.56e-01 90.4% 73.0%
4d70A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.63 52.0 3.84e-01 100.0% 52.5%
1vziA01 2.20.28.100 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain 0.63 34.0 3.92e-01 76.9% 68.4%
1vx7M00 2.40.150.20 Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 0.62 51.0 3.78e-01 92.3% 40.2%
1qzzA03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 50.0 3.49e-01 100.0% 27.8%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 51.0 4.14e-01 100.0% 65.1%
4qu7A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 49.0 4.28e-01 100.0% 59.3%
5eokA05 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 43.0 2.91e-01 100.0% 18.3%
3dohA01 2.60.40.2180 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 52.0 3.90e-01 100.0% 48.9%
1r5bA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 51.0 4.07e-01 100.0% 59.1%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.59 42.0 3.68e-01 80.8% 94.4%
1o9aA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.59 38.0 4.07e-01 100.0% 79.5%
2m05A00 3.30.1490.140 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain 0.58 49.0 4.66e-01 100.0% 92.3%
6ovbA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.58 49.0 3.45e-01 100.0% 96.3%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.58 45.0 3.78e-01 86.5% 47.4%
1jeyA02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.58 49.0 3.81e-01 100.0% 58.7%
2db9A01 3.90.70.200 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain 0.58 48.0 3.60e-01 94.2% 48.9%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 46.0 3.79e-01 100.0% 63.3%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 45.0 3.86e-01 100.0% 57.3%
5cvdB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 47.0 3.09e-01 98.1% 26.5%
2fmaA00 3.30.1490.140 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain 0.54 46.0 4.46e-01 100.0% 91.5%
3a0rA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 44.0 3.66e-01 100.0% 87.7%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.54 46.0 3.39e-01 100.0% 37.1%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 38.0 3.21e-01 100.0% 40.2%
1atiB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 43.0 2.79e-01 98.1% 58.4%
1vs3A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.53 41.0 3.25e-01 100.0% 57.6%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.34e-01 88.5% 45.8%
4j37A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.53 43.0 3.08e-01 100.0% 44.7%
1f8nA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.52 41.0 3.22e-01 100.0% 46.2%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 3.59e-01 86.5% 67.7%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.60e-01 100.0% 58.1%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 35.0 3.34e-01 86.5% 57.1%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.00e-01 100.0% 34.8%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003311 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.97 92.0 6.94e-01 100.0% 47.3%
2475125 3071.1.1.7 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 0.80 71.0 4.93e-01 98.1% 32.3%
4988105 3071.1.1.0 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.79 63.0 5.70e-01 92.3% 64.3%
5054112 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 64.0 5.91e-01 88.5% 83.1%
3059161 1.1.13.30 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 0.77 69.0 5.88e-01 100.0% 65.9%
3981227 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 65.0 5.79e-01 98.1% 66.7%
3584555 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 55.0 5.01e-01 84.6% 60.0%
3974369 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 64.0 5.40e-01 100.0% 58.8%
4650190 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.73 64.0 4.06e-01 100.0% 29.2%
3481883 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 65.0 4.78e-01 100.0% 44.4%
4033372 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 63.0 5.03e-01 100.0% 53.6%
5040464 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 64.0 5.27e-01 100.0% 54.7%
4072524 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.73 66.0 5.09e-01 100.0% 49.1%
3942928 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.73 65.0 5.49e-01 100.0% 68.2%
3730835 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.73 57.0 4.70e-01 90.4% 47.4%
4981269 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 67.0 5.35e-01 100.0% 54.7%
3622139 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 50.0 4.18e-01 86.5% 42.2%
3597932 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.72 63.0 5.22e-01 100.0% 63.2%
5078127 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.72 64.0 5.43e-01 100.0% 94.1%
4963049 4.1.1.486 beta barrels › SH3 › SH3 › SH3 › DUF7098 0.72 58.0 5.13e-01 100.0% 60.0%
3881936 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.72 62.0 5.07e-01 100.0% 97.0%
3387966 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 64.0 5.41e-01 100.0% 62.4%
3535347 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 62.0 4.78e-01 100.0% 65.2%
3851361 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.70 56.0 4.48e-01 88.5% 54.3%
4565791 1.1.7.87 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.70 60.0 5.11e-01 100.0% 60.0%
4663234 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 61.0 5.11e-01 100.0% 63.3%
3949052 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 61.0 5.12e-01 100.0% 57.8%
3408679 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 61.0 3.98e-01 100.0% 27.0%
3412624 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 62.0 3.99e-01 100.0% 29.8%
3971461 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 59.0 5.01e-01 100.0% 60.0%
3801974 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.69 59.0 4.68e-01 100.0% 87.3%
4868829 290.1.1.1 beta barrels › Sortase › Sortase › Sortase › Sortase 0.69 60.0 4.57e-01 100.0% 68.5%
3886492 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.68 52.0 4.61e-01 82.7% 61.3%
3232054 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 52.0 4.16e-01 88.5% 43.0%
3826141 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 53.0 4.49e-01 88.5% 64.4%
3412875 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.67 57.0 4.64e-01 100.0% 86.7%
4030357 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.67 56.0 4.74e-01 100.0% 55.6%
3399965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 4.30e-01 86.5% 48.9%
3881192 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 53.0 3.77e-01 92.3% 42.4%
4932663 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.66 57.0 4.53e-01 100.0% 59.1%
2756432 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.66 57.0 4.23e-01 100.0% 46.4%
3578245 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.66 57.0 4.40e-01 100.0% 54.2%
5079843 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 48.0 4.58e-01 86.5% 66.2%
3476615 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 54.0 4.71e-01 92.3% 72.5%
3270372 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.65 56.0 4.40e-01 100.0% 55.7%
3653015 3174.1.1.1 beta barrels › Ribosomal protein L14-like › Ribosomal protein L14-related › Ribosomal protein L14-related › Ribosomal_L14 0.65 48.0 4.18e-01 86.5% 52.5%
3575776 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 49.0 5.06e-01 84.6% 88.0%
3270538 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.63 54.0 4.15e-01 100.0% 55.2%
5080510 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 54.0 4.53e-01 100.0% 60.0%
4020093 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 48.0 3.63e-01 86.5% 34.1%
3997130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.03e-01 90.4% 46.0%
3566270 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.62 54.0 4.55e-01 100.0% 58.9%
4469533 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.61 52.0 3.38e-01 100.0% 44.2%
3264469 4.1.1.309 beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.59 50.0 4.35e-01 98.1% 64.7%
3391463 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.59 50.0 3.77e-01 94.2% 48.0%
3253267 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 48.0 4.13e-01 94.2% 58.8%
3447437 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.57 48.0 3.57e-01 94.2% 51.9%
3177469 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 41.0 3.76e-01 76.9% 58.6%
4649925 304.102.1.7 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.56 47.0 3.23e-01 100.0% 30.2%
3360551 706.1.1.3 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GIL1_IRKI_C 0.55 44.0 4.37e-01 88.5% 98.2%
3269002 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.79e-01 100.0% 53.3%
3676128 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.55 47.0 3.73e-01 100.0% 49.6%
3914314 804.1.1.3 a+b four layers › Hypothetical protein YwqG › Hypothetical protein YwqG › Hypothetical protein YwqG › PDCD2_C, PF30657 0.54 42.0 2.88e-01 88.5% 25.1%
3710599 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.54 43.0 2.88e-01 100.0% 24.1%
3595076 304.102.1.0 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.54 43.0 2.88e-01 100.0% 24.1%
4074228 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.53 42.0 2.84e-01 100.0% 31.3%